Literature DB >> 32160469

Ultrafast Formation of the Charge Transfer State of Prodan Reveals Unique Aspects of the Chromophore Environment.

Swapnil Baral1, Matthew Phillips2, Han Yan2, Joseph Avenso1, Lars Gundlach1,2, Björn Baumeier3,4, Edward Lyman1,2.   

Abstract

Lipophilic dyes such as laurdan and prodan are widely used in membrane biology due to a strong bathochromic shift in emission that reports the structural parameters of the membrane such as area per molecule. Disentangling of the factors which control the spectral shift is complicated by the stabilization of a charge-transfer-like excitation of the dye in polar environments. Predicting the emission therefore requires modeling both the relaxation of the environment and the corresponding evolution of the excited state. Here, an approach is presented in which (i) the local environment is sampled by a classical molecular dynamics (MD) simulation of the dye and solvent, (ii) the electronically excited state of prodan upon light absorption is predicted by numerical quantum mechanics (QM), (iii) the iterative relaxation of the environment around the excited dye by MD coupled with the evolution of the excited state is performed, and (iv) the emission properties are predicted by QM. The QM steps are computed using the many-body Green's function in the GW approximation and the Bethe-Salpeter equation with the environment modeled as fixed point charges, sampled in the MD simulation steps. The comparison to ultrafast time-resolved transient absorption measurements demonstrates that the iterative molecular mechanics (MM)/QM approach agrees quantitatively with both the polarity-dependent shift in emission and the time scale over which the charge transfer state is stabilized. Together the simulations and experimental measurements suggest that the evolution into the charge transfer state is slower in amphiphilic solvents.

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Year:  2020        PMID: 32160469      PMCID: PMC7587403          DOI: 10.1021/acs.jpcb.0c00121

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  25 in total

1.  Efficient scheme for GW quasiparticle band-structure calculations with applications to bulk Si and to the Si(001)-(2 x 1) surface.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1995-07-15

2.  New insights on the behavior of PRODAN in homogeneous media and in large unilamellar vesicles.

Authors:  Fernando Moyano; M Alicia Biasutti; Juana J Silber; N Mariano Correa
Journal:  J Phys Chem B       Date:  2006-06-22       Impact factor: 2.991

3.  Ultrafast Relaxation Dynamics of Photoexcited Zinc-Porphyrin: Electronic-Vibrational Coupling.

Authors:  Baxter Abraham; Jesus Nieto-Pescador; Lars Gundlach
Journal:  J Phys Chem Lett       Date:  2016-08-03       Impact factor: 6.475

4.  Phase fluctuation in phospholipid membranes revealed by Laurdan fluorescence.

Authors:  T Parasassi; G De Stasio; A d'Ubaldo; E Gratton
Journal:  Biophys J       Date:  1990-06       Impact factor: 4.033

5.  TD-DFT calculations of one- and two-photon absorption in Coumarin C153 and Prodan: attuning theory to experiment.

Authors:  Merle Uudsemaa; Aleksander Trummal; Sophie de Reguardati; Patrik R Callis; Aleksander Rebane
Journal:  Phys Chem Chem Phys       Date:  2017-11-01       Impact factor: 3.676

6.  Automation of the CHARMM General Force Field (CGenFF) II: assignment of bonded parameters and partial atomic charges.

Authors:  K Vanommeslaeghe; E Prabhu Raman; A D MacKerell
Journal:  J Chem Inf Model       Date:  2012-11-28       Impact factor: 4.956

7.  CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields.

Authors:  K Vanommeslaeghe; E Hatcher; C Acharya; S Kundu; S Zhong; J Shim; E Darian; O Guvench; P Lopes; I Vorobyov; A D Mackerell
Journal:  J Comput Chem       Date:  2010-03       Impact factor: 3.376

8.  Failure of time-dependent density functional theory for long-range charge-transfer excited states: the zincbacteriochlorin-bacteriochlorin and bacteriochlorophyll-spheroidene complexes.

Authors:  Andreas Dreuw; Martin Head-Gordon
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

9.  A multidimensional phasor approach reveals LAURDAN photophysics in NIH-3T3 cell membranes.

Authors:  Leonel Malacrida; David M Jameson; Enrico Gratton
Journal:  Sci Rep       Date:  2017-08-23       Impact factor: 4.379

10.  Electronic Excitations in Complex Molecular Environments: Many-Body Green's Functions Theory in VOTCA-XTP.

Authors:  Jens Wehner; Lothar Brombacher; Joshua Brown; Christoph Junghans; Onur Çaylak; Yuriy Khalak; Pranav Madhikar; Gianluca Tirimbò; Björn Baumeier
Journal:  J Chem Theory Comput       Date:  2018-11-21       Impact factor: 6.006

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  1 in total

1.  Dissecting the mechanisms of environment sensitivity of smart probes for quantitative assessment of membrane properties.

Authors:  Franziska Ragaller; Luca Andronico; Jan Sykora; Waldemar Kulig; Tomasz Rog; Yagmur Balim Urem; Dmytro I Danylchuk; Martin Hof; Andrey Klymchenko; Mariana Amaro; Ilpo Vattulainen; Erdinc Sezgin
Journal:  Open Biol       Date:  2022-09-14       Impact factor: 7.124

  1 in total

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