| Literature DB >> 32153993 |
Huan Lian1, Han Wang1, Qianqian Han1, Chunren Wang1.
Abstract
Bone morphogenetic protein (BMP), belongs to transforming growth factor-β (TGF-β) superfamily except BMP-1. Implanting BMP into muscular tissues induces ectopic bone formation at the site of implantation, which provides opportunity for the treatment of bone defects. Recombinant human BMP-2 (rhBMP-2) has been used clinically, but the lack of standard methods for quantifying rhBMP-2 biological activity greatly hindered the progress of commercialization. In this article, we describe an in vitro rhBMP-2 quantification method, as well as the data analyzation pipeline through logistic regression in RStudio. Previous studies indicated that alkaline phosphatase (ALP) activity of C2C12 cells was significantly increased when exposed to rhBMP-2, and showed dose-dependent effects in a certain concentration range of rhBMP-2. Thus, we chose to quantify ALP activity as an indicator of rhBMP-2 bioactivity in vitro. A sigmoid relationship between the ALP activity and concentration of rhBMP-2 was discovered. However, there are tons of regression models for such a non-linear relationship. It has always been a major concern for researchers to choose a proper model that not only fit data accurately, but also have parameters representing practical meanings. Therefore, to fit our rhBMP-2 quantification data, we applied two logistic regression models, three-parameter log-logistic model and four-parameter log-logistic model. The four-parameter log-logistic model (adj-R 2 > 0.98) fits better than three-parameter log-logistic model (adj-R 2 > 0.75) for the sigmoid curves. Overall, our results indicate rhBMP-2 quantification in vitro can be accomplished by detecting ALP activity and fitting four-parameter log-logistic model. Furthermore, we also provide a highly adaptable R script for any additional logistic models.Entities:
Keywords: R programming; rhBMP-2 bioactivity quantification; statistical model fitting
Year: 2019 PMID: 32153993 PMCID: PMC7053258 DOI: 10.1093/rb/rbz038
Source DB: PubMed Journal: Regen Biomater ISSN: 2056-3426
The results of different rhBMP-2 concentration and corresponding A405 values for both standard and sample
| Concentration (10 μg/ml) | BMP-2 Standard | BMP-2 Sample |
|---|---|---|
| 1 | 1.232 ± 0.005 | 1.177 ± 0.003 |
| 0.5 | 1.189 ± 0.014 | 1.148 ± 0.007 |
| 0.25 | 1.144 ± 0.016 | 1.131 ± 0.010 |
| 0.125 | 1.124 ± 0.003 | 1.049 ± 0.019 |
| 0.0625 | 1.019 ± 0.002 | 0.881 ± 0.084 |
| 0.03125 | 0.759 ± 0.051 | 0.504 ± 0.069 |
| 0.015625 | 0.431 ± 0.027 | 0.226 ± 0.056 |
| 0.007813 | 0.351 ± 0.041 | 0.181 ± 0.041 |
Data of triplicates are shown as mean ± SD.
The results of parameter estimates in three-parameter log-logistic model
| Parameters | Estimate | Standard error |
|
|
|---|---|---|---|---|
|
| 1.1691 | 0.0231 | 50.53 | 5.74e-08 |
|
| 0.0231 | 0.0198 | 11.65 | 8.20e-05 |
|
| 0.0178 | 0.0025 | 7.18 | 0.000818 |
|
| 1.1285 | 0.0234 | 48.21 | 7.25e-08 |
|
| 0.0379 | 0.0024 | 15.47 | 2.05e-05 |
|
| 0.0186 | 0.0022 | 8.58 | 0.000354 |
Parameters for rhBMP-2 standard and sample are indicated with subscripts ‘std’ and ‘sap’, respectively.
The results of parameter estimates in four-parameter log-logistic model
| Parameters | Estimate | Standard error |
|
|
|---|---|---|---|---|
|
| −2.0973 | 0.4031 | −5.20 | 0.006506 |
|
| 0.2885 | 0.0566 | 5.10 | 0.006991 |
|
| 1.1891 | 0.0222 | 53.45 | 7.344e-07 |
|
| 0.0312 | 0.0029 | 10.63 | 0.000444 |
|
| −2.2042 | 0.2161 | −10.20 | 0.000521 |
|
| 0.1399 | 0.0278 | 5.04 | 0.007296 |
|
| 1.1550 | 0.0015 | 77.06 | 1.700e-07 |
|
| 0.0410 | 0.0019 | 21.04 | 3.016e-05 |
Parameters for rhBMP-2 standard and sample are indicated with subscript ‘std’ and ‘sap’, respectively.
The results of model coefficients in both three-parameter log-logistic model and four-parameter log-logistic model
| Coefficient | Three-parameter log-logistic | Four-parameter log-logistic | ||
|---|---|---|---|---|
| Standard | Sample | Standard | Sample | |
|
| 0.86837 | 0.91690 | 0.99550 | 0.99930 |
| adj- | 0.76965 | 0.85458 | 0.98950 | 0.99837 |
| RSE | 0.10978 | 0.10305 | 0.00375 | 0.00090 |
Data for BMP-2 standard and sample are indicated separately.