| Literature DB >> 32153605 |
Monica Marilena Miazzi1, Valentina di Rienzo2, Isabella Mascio1,2, Cinzia Montemurro1,2, Sara Sion1, Wilma Sabetta2,3, Gaetano Alessandro Vivaldi4, Salvatore Camposeo4, Francesco Caponio1, Giacomo Squeo1, Graziana Difonzo1, Guiliana Loconsole1,2, Giovanna Bottalico1,2, Pasquale Venerito5, Vito Montilon1, Antonella Saponari5, Giuseppe Altamura5, Giovanni Mita6, Alessandro Petrontino2, Vincenzo Fucilli2,4, Francesco Bozzo2,4.
Abstract
The olive tree is one of the most important economic, cultural, and environmental resources for Italy, in particular for the Apulian region, where it shows a wide diversity. The increasing attention to the continuous loss of plant genetic diversity due to social, economic and climatic changes, has favored a renewed interest in strategies aimed at the recovery and conservation of these genetic resources. In the frame of a project for the valorization of the olive Apulian biodiversity (Re.Ger.O.P. project), 177 minor genotypes were recovered in different territories of the region. They were submitted to morphological, molecular, technological and phytosanitary status analysis in comparison with reference cultivars, then they were propagated and transferred in an ex situ field. All the available information was stored in an internal regional database including photographic documentation and geographic position. The work allowed obtaining information about the genetic diversity of Apulian germplasm, to clarify cases of homonymy and synonymy, to check the sanitary status, and to identify candidate genotypes useful both to set up breeding programs and to enrich the panel of olive cultivars available to farmers for commercial exploitation.Entities:
Keywords: characterization; diversity; homonymy and synonymy; olive; rare germplasm; resources for breeding
Year: 2020 PMID: 32153605 PMCID: PMC7044272 DOI: 10.3389/fpls.2020.00073
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 5.753
Figure 1Geographic map of ‘Apulia’ with collection sites of samples.
Figure 2Dendrogram generated by Neighbor-Joining clustering method, illustrating the relationships among 97 olive Apulian genotypes, using the morphological markers.
Results of the clustering of the 97 Apulian genotypes based on morphological traits. Known genotypes indicate genotypes present in the databank OLEADB.
| Cluster | Sub-cluster | Profile | Genotypes described in OLEADB | Genotypes undescribed in OLEADB | Unknown genotypes | Other new genotypes |
|---|---|---|---|---|---|---|
| I | I A | 1 | Pizzutella, Uccellina | – | Unknown 7, Koroneiki-type | – |
| 2 | Butirra di Melpignano | – | Unknown 13 | – | ||
| 3 | Cornale, Marinese, Oliva bianca | Cornetto, Pizzutella bianca | – | – | ||
| I B | 4 | Leucocarpa 1, Cornulara | Trigno, Primamezzana 4 | Pendolino-type 1 | – | |
| 5 | – | Leucocarpa 2, Passa dolce, San Giovanni, Signora Francesca | – | – | ||
| II | II A | 6 | Piangente, Racioppa | Fragolina, Uaccdain | Unknown (Gulliver) | – |
| 7 | Peppino Leo, Olivetta | Canua 1, | – | – | ||
| 8 | – | Silletta Nisi, Torremaggiore Sacco, Torremaggiorese | – | – | ||
| 9 | Colozzese, Dritta, Nolca, Rosciola (1, 2), Termite di Bitetto, Tunnella | Rumanella, Ogliarola 1 | Unknown 01 | – | ||
| 10 | Peranzana | – | – | – | ||
| 11 | Provenzale | Grappa, Cellina 3, Ogliarola 2,5,7, | Unknown 6 | – | ||
| 12 | – | Cellina 2,4,5,8,9 | – | |||
| 13 | Barone di Monteprofico | Orniella, Cellina 6 | Pendolino-type 2 | Oleaster | ||
| 14 | – | – | Unknown secolare | – | ||
| II B | 15 | Corniola, Oliva dolce | Fragile, Mennella, Silletta | Arbequina-type | – | |
| 16 | – | Primamezzana 1, Sanguinella | – | |||
| III | III A | 17 | – | Ogliarola 3,4,6,8,9, Cellina 7 | – | |
| 18 | – | Ogliarola di Biccari, Oliva maggiorata, Rosciolone | – | – | ||
| III B | 19 | – | Ciciulara, Morosino, Piccolina, Sannicandrese, | Unknown 14 | – | |
| 20 | Grossa di Spagna, Sant'Agostino, San Francesco | Daoli | Unknown 1, Unknown (SG) | – | ||
| 21 | Dolce di Cassano, Ravece | – | – | – | ||
| 22 | Dolce di Sannicandro | Dolce paesana | Unknown Troia | – | ||
| 23 | Sperone di gallo, Usciana | Stelletta | Martucci 1 | – |
Genetic indices obtained by SSR analysis on 177 minor Apulian accessions.
| Minor Apulian genotypes (177) | Locus | Na | Ne | I | Ho | He | F | PIC |
|---|---|---|---|---|---|---|---|---|
| 11 | 6.48 | 2.04 | 0.82 | 0.85 | 0.03 | 0.829 | ||
| 11 | 3.82 | 1.74 | 0.76 | 0.74 | −0.02 | 0.716 | ||
| 17 | 11.02 | 2.51 | 0.89 | 0.91 | 0.03 | 0.902 | ||
| 8 | 3.24 | 1.55 | 0.44 | 0.69 | 0.37 | 0.664 | ||
| 9 | 3.37 | 1.49 | 0.35 | 0.70 | 0.50 | 0.662 | ||
| 15 | 4.99 | 1.94 | 0.65 | 0.80 | 0.19 | 0.777 | ||
| 14 | 6.52 | 2.13 | 0.77 | 0.85 | 0.09 | 0.83 | ||
| 8 | 3.99 | 1.54 | 0.83 | 0.75 | −0.11 | 0.713 | ||
| 8 | 5.04 | 1.76 | 0.85 | 0.80 | −0.07 | 0.773 | ||
| 8 | 3.44 | 1.47 | 0.56 | 0.71 | 0.20 | 0.67 | ||
| 4 | 1.57 | 0.68 | 0.10 | 0.36 | 0.72 | 0.332 | ||
| 113 | ||||||||
| 10 | 4.86 | 1.71 | 0.64 | 0.74 | 0.18 | 0.72 | ||
| Reference cultivars (59) | ||||||||
| 11 | 5.22 | 1.92 | 0.88 | 0.81 | −0.09 | 0.79 | ||
| 11 | 3.91 | 1.74 | 0.73 | 0.74 | 0.02 | 0.72 | ||
| 16 | 10.45 | 2.50 | 0.69 | 0.90 | 0.24 | 0.90 | ||
| 14 | 3.22 | 1.69 | 0.51 | 0.69 | 0.26 | 0.67 | ||
| 7 | 3,61 | 1.53 | 0.73 | 0.72 | −0.01 | 0.69 | ||
| 17 | 6.88 | 2.25 | 0.62 | 0.85 | 0.27 | 0.84 | ||
| 22 | 9.02 | 2.56 | 0.76 | 0.89 | 0.14 | 0.88 | ||
| 10 | 4.97 | 1.89 | 0.84 | 0.80 | −0.06 | 0.78 | ||
| 14 | 8.17 | 2.33 | 0.83 | 0.88 | 0.05 | 0.87 | ||
| 12 | 4.41 | 1.84 | 0.75 | 0.77 | 0.04 | 0.75 | ||
| 9 | 2.64 | 1.32 | 0.46 | 0.62 | 0.26 | 0.58 | ||
| 143 | ||||||||
| 13 | 5.68 | 1.96 | 0.71 | 0.79 | 0.10 | 0.77 | ||
| Whole collection (236) | 12 | 6.27 | 2.05 | 0.83 | 0.84 | 0.01 | 0.824 | |
| 12 | 5.12 | 1.93 | 0.75 | 0.8 | 0.07 | 0.785 | ||
| 21 | 13.61 | 2.73 | 0.84 | 0.93 | 0.1 | 0.922 | ||
| 15 | 4.19 | 1.83 | 0.45 | 0.76 | 0.4 | 0.738 | ||
| 13 | 4.8 | 1,9 | 0.45 | 0.79 | 0.43 | 0.769 | ||
| 22 | 7 | 2.33 | 0.64 | 0.86 | 0.25 | 0.844 | ||
| 27 | 9.67 | 2.63 | 0.77 | 0.9 | 0.14 | 0.889 | ||
| 11 | 5.84 | 1.99 | 0.83 | 0.83 | −0.01 | 0.81 | ||
| 15 | 7.33 | 2.25 | 0.85 | 0.86 | 0.02 | 0.85 | ||
| 15 | 5.08 | 1.95 | 0.61 | 0.8 | 0.24 | 0.782 | ||
| 10 | 1.79 | 0.93 | 0.19 | 0.44 | 0.57 | 0.411 | ||
| 172 | ||||||||
| 16 | 6.43 | 2.05 | 0.66 | 0.8 | 0.2 | 0.78 |
Size range (bp); Na, number of observed alleles; Ne, number of effective alleles; I, Shannon's information index; Ho, observed heterozygosity; He, expected heterozygosity; F, fixation index; PIC, polymorphic information content.
List of pairwise relatedness based on LRM estimator (Lynch and Ritland, 1999).
| Genotypes with LRM = 0.5 | |
|---|---|
| OGLIAROLA2 | OGLIAROLA5 |
| OGLIAROLA2 | OGLIAROLA6 |
| OGLIAROLA5 | OGLIAROLA6 |
| PERANZANA2 | PERANZANA3 |
| SAN FRANCESCO | DONNA FRANCESCA |
| COLMONA | LCELLIN |
| COLMONA | SAN FRANCESCO |
| LCELLIN | SAN FRANCESCO |
| COLMONA | DONNA FRANCESCA |
| LCELLIN | DONNA FRANCESCA |
| DOLCE DI CASSANO | DOLCE DI SANNICANDRO |
| UACCIDIN 2 | MELE |
| RUMANELLA GRAZIANO INTERNA | ROTONDELLA O ROSCIOLA |
| CAZZALORA | GROSSA DI SPAGNA |
Cases of homonymies based on LRM estimator (Lynch and Ritland, 1999).
| Homonyms LRM < 0.2 | |
|---|---|
| CELLINA 7 | CELLINA 1, 2, 3, 4, 6, 5, 8 |
| DRITTA 2 | DRITTA 1 |
| MELILL 1 | MELILL 2 |
| NOLCA 1 | NOLCA 2 |
| OGLIAROLA 01 | OGLIAROLA 1, 2, 3, 4, 5, 6, 7,8 |
| OGLIAROLA | OGLIAROLA 2, 3, 4, 5, 6, 7, 8 |
| OGLIAROLA 2 | OGLIAROLA 3, 8 |
| OGLIAROLA 3 | OGLIAROLA 4, 5, 6, 7 |
| OGLIAROLA 4 | OGLIAROLA 8 |
| OGLIAROLA 5 | OGLIAROLA 8 |
| PENDOLINO TYPE1 | PENDOLINO TYPE2 |
| PEPPERINELLA CHIEUTI 1 | PEPPERINELLA CHIEUTI 2 |
| PRIMEMEZZANA 3 | PRIMEMEZZANA 4 |
| PROVENZALE | PROVENZALE CHIEUTI |
| PROVENZALE | PRUVENZALE |
| PROVENZALE CHIEUTI | PRUVENZALE |
| PASOLINA | PASOLA OSTUNI |
| PIZZUTA SEPPUNISI | PIZZUTA |
| PIZZUTA SEPPUNISI | PIZZUTA ESTERNA GRAZIANO |
| PIZZUTA | PIZZUTA ESTERNA GRAZIANO |
| RACIOPPA 1 | RACIOPPA 2 |
| RACIOPPA 2 | RACIUEPP |
| RUMANELLA 1 | RUMANELLA 2 |
| RUMANELLA 2 | RUMANELLA GRAZIANO INT. |
| ROSCIOLA 1 | ROSCIOLA 2 |
| ROSCIOLA SERRA | ROSCIOLA 1 |
| ROSCIOLONE | ROSCIOLA 1 |
| SILETTA NISI | SILLETTA 1, 2 |
| TRIGNA | TRIGNO |
Figure 3Dendrogram generated by Neighbor-Joining clustering method, illustrating the phylogenetic relationships among 236 olive genotypes, using the SSR markers.
Descriptive statistics of the purity characteristics of the monovarietal oils obtained from 34 minor olive Apulian accessions.
| Min | Max | Mean | Q1 | Q3 | IQR | |
|---|---|---|---|---|---|---|
| Myristic acid C14:0 | 0.00 | 0.03 | 0.01 | 0.00 | 0.02 | 0.02 |
| Palmitic acid C16:0 | 9.67 | 19.99 | 14.46 | 12.52 | 16.08 | 3.56 |
| Palmitoleic acid C16:1 | 0.10 | 3.05 | 1.52 | 0.83 | 2.08 | 1.25 |
| Margaric acid C17:0 | 0.00 | 0.31 | 0.09 | 0.04 | 0.13 | 0.09 |
| Heptadecenoic acid C17:1 | 0.02 | 0.33 | 0.12 | 0.08 | 0.14 | 0.06 |
| Stearic acid C18:0 | 0.97 | 2.82 | 1.91 | 1.65 | 2.16 | 0.51 |
| Oleic acid C18:1 | 58.73 | 79.73 | 71.23 | 69.16 | 74.36 | 5.20 |
| Linoleic acid C18:2 | 4.12 | 16.18 | 9.36 | 7.61 | 10.70 | 3.09 |
| Linolenic acid C18:3 | 0.14 | 0.80 | 0.31 | 0.23 | 0.36 | 0.13 |
| Arachidic acid C20:0 | 0.22 | 0.60 | 0.50 | 0.46 | 0.56 | 0.10 |
| Gadoleic acid C20:1 | 0.15 | 0.49 | 0.34 | 0.30 | 0.39 | 0.10 |
| Behenic acid C22:0 | 0.00 | 0.18 | 0.08 | 0.05 | 0.11 | 0.06 |
| Lignoceric acid C24:0 | 0.00 | 0.20 | 0.03 | 0.00 | 0.05 | 0.05 |
| SFA | 12.63 | 22.39 | 17.07 | 15.59 | 18.33 | 2.74 |
| MUFA | 62.29 | 81.27 | 73.21 | 71.67 | 75.98 | 4.31 |
| PUFA | 4.51 | 16.41 | 9.67 | 7.92 | 11.09 | 3.18 |
| Oleic/Linoleic | 3.63 | 19.35 | 8.47 | 6.53 | 9.64 | 3.10 |
| MUFA/PUFA | 3.80 | 18.02 | 8.33 | 6.47 | 9.48 | 3.01 |
| Cholesterol | 0.00 | 0.40 | 0.20 | 0.00 | 0.20 | 0.20 |
| Brassicasterol | 0.00 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 |
| Campesterol | 1.90 | 3.70 | 2.70 | 2.40 | 3.00 | 0.60 |
| Campestanol | 0.10 | 1.00 | 0.40 | 0.30 | 0.50 | 0.30 |
| Stigmasterol | 0.30 | 2.70 | 1.10 | 0.80 | 1.40 | 0.60 |
| Δ-7-Campesterol | 0.00 | 0.90 | 0.20 | 0.00 | 0.30 | 0.30 |
| Apparent β-Sitosterol | 93.00 | 95.30 | 93.50 | 93.10 | 93.70 | 0.60 |
| Δ-7-Stigmastenol | 0.00 | 0.50 | 0.30 | 0.20 | 0.30 | 0.10 |
| Δ-7-Avenasterol | 0.10 | 0.80 | 0.40 | 0.30 | 0.60 | 0.30 |
| Total sterols (mg kg) | 1017 | 2791 | 1846 | 1390 | 2222 | 832 |
Q1, first quartile; Q3, third quartile; IQR, inter-quartile range; SFA, total saturated fatty acids; MUFA, total mono-unsaturated fatty acids; PUFA, total poly-unsaturated fatty acids.