| Literature DB >> 32151114 |
Ümit Özgür Akdemir1, Irem Çapraz2, Seda Gülbahar Ateş1, Kerim Şeker1, Uğuray Aydos1, Gökhan Kurt3, Neşe Karabacak1, Lütfiye Özlem Atay1, Erhan Bilir2.
Abstract
Background/aim: In temporal lobe epilepsy (TLE), brain positron emission tomography (PET) performed with F-18 fluorodeoxyglucose (FDG) is commonly used for lateralization of the epileptogenic temporal lobe. In this study, we aimed to evaluate the success of quantitative analysis of brain FDG PET images using data mining methods in the lateralization of the epileptogenic temporal lobe. Materials and methods: Presurgical interictal brain FDG PET images of 49 adult mesial TLE patients with a minimum of 2 years of postsurgical follow-up and Engel I outcomes were retrospectively analyzed. Asymmetry indices were calculated from PET images from the mesial temporal lobe and its contiguous structures. The J48 and the logistic model tree (LMT) data mining algorithms were used to find classification rules for the lateralization of the epileptogenic temporal lobe. The classification results obtained by these rules were compared with the physicians’ visual readings and the findings of single-patient statistical parametric mapping (SPM) analyses in a test set of 18 patients. An additional 5-fold cross-validation was applied to the data to overcome the limitation of a relatively small sample size.Entities:
Keywords: F-18 fluorodeoxyglucose; Temporal lobe epilepsy; classification; data mining; positron emission tomography
Year: 2020 PMID: 32151114 PMCID: PMC7379449 DOI: 10.3906/sag-1911-71
Source DB: PubMed Journal: Turk J Med Sci ISSN: 1300-0144 Impact factor: 0.973
The lateralizations of TLE patients in the test group (n = 18) by visual assessment of nuclear medicine physicians, SPM analysis, and data mining methods (J48 and LMT algorithms) in comparison to the definitive lateralization according to the postsurgical favorable (Engel I) outcomes.
| Test data (Patient numbers) | Definitive lateralization | Visual assessment | SPManalysis | J48algorithm | LMT algorithm | ||
|---|---|---|---|---|---|---|---|
| Reader1 | Reader2 | Consensus | |||||
| 1 | Left | Left | Left | Left | Left | Left | Left |
| 2 | Left | Left | Left | Left | Left | Left | Left |
| 3 | Left | Left | Left | Left | Left | Left | Left |
| 4 | Left | Left | Left | Left | Left | Left | Left |
| 5 | Left | Left | Left | Left | Left | Left | Left |
| 6 | Left | Left | Left | Left | Left | Left | Left |
| 7 | Left | Left | Left | Left | Left | Left | Left |
| 8 | Left | Left | Left | Left | Left | Left | Left |
| 9 | Right | Right | Right | Right | Right | Right | Right |
| 10 | Right | Right | Right | Right | Right | Right | Right |
| 11 | Left | Left | Left | Left | Left | Left | Left |
| 12 | Left | Left | Left | Left | No lateralization | Right | Right |
| 13 | Right | Right | Left | Right | Right | Right | Right |
| 14 | Right | Right | Right | Right | No lateralization | Right | Right |
| 15 | Right | Right | Right | Right | Right | Right | Right |
| 16 | Right | Right | Right | Right | Right | Right | Right |
| 17 | Right | Right | Right | Right | Right | Right | Right |
| 18 | Right | Right | Right | Right | Right | Left | Right |
| Correct lateralization (ratio, %) | 18/18, 100% | 17/18, 94% | 18/18, 100% | 16/18, 89% | 16/18, 89% | 17/18, 94% | |
Note: Italic characters are used whenever the lateralization is not successful (“No lateralization”) or false in comparison to the definitive lateralization. Left and right refer to left TLE and right TLE, respectively. The criteria for the J48 model were “Left TLE” if AIROI[Hippocampus] was lower than or equal to 3.18 and “Right TLE” if AIROI[Hippocampus] was greater than 3.18. The criteria for the LMT algorithm were as follows: Class “Left TLE”: 0.06 + AIROI[Hippocampus] × –0.08 + AIROI[Temporal pole of middle temporal gyrus] × –0.03 and Class “Right TLE”: –0.06 + AIROI[Hippocampus] × 0.08 + AIROI[Temporal pole of the middle temporal gyrus] × 0.03.
The results of 5-runs of data mining algorithms according to the k-fold cross-validation method using the randomly produced training and test sets.
| k-fold cross-validation method | J48 algorithm | LMT algorithm | ||
|---|---|---|---|---|
| Model | Correct lateralization (ratio, %) | Model | Correct lateralization (ratio, %) | |
| 1st run | AIROI[Inferior temporal gyrus] ≤ –3.99: LeftAIROI[Inferior temporal gyrus] > –3.99: Right | 9/10, 90% | Class Left : 0.13 + AIROI[Hippocampus] × –0.07 + AIROI[Temporal pole of middle temporal gyrus] × –0.02Class Right : –0.13 + AIROI[Hippocampus] × 0.07 + AIROI[Temporal pole of middle temporal gyrus] × 0.02 | 10/10, 100% |
| 2nd run | AIROI[Inferior temporal gyrus] ≤ –3.99: LeftAIROI[Inferior temporal gyrus] > –3.99: Right | 10/10, 100% | Class Left : 0.14 + AIROI[Hippocampus] × -0.07Class Right : –0.14 + AIROI[Hippocampus] × 0.07 | 9/10, 90% |
| 3rd run | AIROI[Parahippocampal gyrus] ≤ –5.46: LeftAIROI[Parahippocampal gyrus] > –5.46: Right | 9/9, 100% | Class Left : 0.16 + AIROI[Hippocampus] × –0.07 + AIROI[Temporal pole of middle temporal gyrus] × –0.02Class Right : –0.16 + AIROI[Hippocampus] × 0.07 + AIROI[Temporal pole of middle temporal gyrus] × 0.02 | 9/9, 100% |
| 4th run | AIROI[Rolandic operculum] ≤ 2.06: LeftAIROI[Rolandic operculum] > 2.06: Right | 8/10, 80% | Class Left : 0.09 + AIROI[Hippocampus] × –0.07 + AIROI[Temporal pole of middle temporal gyrus] × –0.03Class Right : –0.09 + AIROI[Hippocampus] × 0.07 + AIROI[Temporal pole of middle temporal gyrus] × 0.03 | 9/10, 90% |
| 5th run | AIROI[Parahippocampal gyrus] ≤ –0.24: LeftAIROI[Parahippocampal gyrus] > –0.24: Right | 7/10, 70% | Class Left : 0.23 + AIROI[Hippocampus] × –0.07 + AIROI[Temporal pole of middle temporal gyrus] × –0.02Class Right : –0.23 + AIROI[Hippocampus] × 0.07 + AIROI[Temporal pole of middle temporal gyrus] × 0.02 | 10/10, 100% |
| Mean | 43/49, 88% | 47/49, 96% | ||
Note: The models show the classification criteria obtained in each run of J48 and LMT algorithms using the training set. For this purpose the whole study group is randomly divided into five smaller, nonoverlapping subgroups while trying to preserve a similar ratio of left-to-right TLE in each subgroup. The subgroups included 10 patients in all except one which included 9 patients. Then, a five-fold cross-validation procedure was applied by using one subgroup as the test set and the other subgroups all together as the training set in each run. The mean correct lateralization ratios were calculated for J48 and LMT algorithms.