| Literature DB >> 32150243 |
Ralf Krumkamp1,2, Cassandra Aldrich1,2,3, Oumou Maiga-Ascofare1,2,4, Joyce Mbwana5, Njari Rakotozandrindrainy6, Steffen Borrmann7,8, Simone M Caccio9, Raphael Rakotozandrindrainy6, Ayola Akim Adegnika7,8, John P A Lusingu5, John Amuasi4, Jürgen May1,2, Daniel Eibach1,2.
Abstract
BACKGROUND: Cryptosporidiosis has been identified as one of the major causes of diarrhea and diarrhea-associated deaths in young children in sub-Saharan Africa. This study traces back Cryptosporidium-positive children to their human and animal contacts to identify transmission networks.Entities:
Keywords: Africa; cryptosporidium; molecular epidemiology; transmission
Mesh:
Year: 2021 PMID: 32150243 PMCID: PMC8075035 DOI: 10.1093/cid/ciaa223
Source DB: PubMed Journal: Clin Infect Dis ISSN: 1058-4838 Impact factor: 9.079
Characteristics of the Study Participants and Identified Cryptosporidium Species, by Study Site and Sampling Group
| Characteristic | Initial Cases | Household Contacts | Neighboring Children | Animal Contacts |
|---|---|---|---|---|
| Gabon | ||||
| Observations, No. | 214 | 79 | 0 | 0 |
| Age, y, median (IQR) | 0 (0–1) | 15 (6–25) | … | … |
| Female sex | 93 (43) | 48 (62) | … | … |
| | 44 (21) | 16 (20) | … | … |
| | 35 (80) | 13 (81) | … | … |
| | 8 (18) | 2 (13) | … | … |
| | 1 (2) | … | … | |
| | 1 (6) | … | … | |
| Ghana | ||||
| Observations, No. | 410 | 105 | 97 | 133 |
| Age, y, median (IQR) | 1 (0–1) | 15 (6–31) | 3 (0–5) | ND |
| Female sex | 183 (45) | 75 (71) | 43 (44) | ND |
| | 47 (11) | 11 (10) | 18 (19) | 20 (15) |
| | 26 (55) | 4 (36) | 8 (44) | |
| | 15 (32) | 6 (55) | 7 (39) | 2 (10) |
| | 3 (6) | … | … | … |
| | 2 (4) | 1 (9) | 3 (17) | |
| | 1 (2) | … | … | 17 (85) |
| | … | … | … | 1 (5) |
| Madagascar | ||||
| Observations, No. | 209 | 52 | 50 | 80 |
| Age, y, median (IQR) | 1 (0–1) | 21 (18–36) | 3 (1–3) | ND |
| Female sex | 106 (51) | 35 (67) | 23 (46) | ND |
| | 25 (12) | 4 (8) | 18 (36) | 6 (8) |
| | 20 (80) | 4 (100) | 16 (89) | 3 (50) |
| | 5 (20) | … | 2 (11) | … |
| | … | … | … | 1 (17) |
| | … | … | … | 1 (17) |
| | … | … | … | 1 (17) |
| Tanzania | ||||
| Observations, No. | 462 | 114 | 111 | 125 |
| Age, y, median (IQR) | 1 (0–1) | 18 (7–30) | 3 (1–3) | ND |
| Female sex | 216 (47) | 67 (59) | 61 (55) | ND |
| | 68 (15) | 16 (14) | 24 (22) | 19 (15) |
| | 63 (94) | 15 (94) | 19 (79) | 10 (53) |
| | 3 (4) | 1 (6) | 2 (8) | … |
| | 1 (1) | … | 1 (4) | … |
| | … | … | 2 (8) | … |
| | … | … | … | 6 (32) |
| | … | … | … | 2 (11) |
| | … | … | … | 1 (5) |
| Negative initial cases and contacts (all countries) | ||||
| Observations, No. | 68 | 215 | 162 | 244 |
| Age, y, median (IQR) | 1 (0–1) | 20 (8–32) | 2 (1–3) | ND |
| Female sex | 22 (32) | 122 (57) | 92 (57) | ND |
| | 0 (0) | 8 (4) | 13 (8) | 27 (11) |
| | … | 4 (50) | 10 (77) | 8 (30) |
| | … | 2 (25) | 1 (8) | … |
| | … | 1 (13) | … | … |
| | … | 1 (13) | 1 (8) | … |
| | … | … | 1 (8) | 1 (4) |
| | … | … | … | 11 (41) |
| | … | … | … | 2 (7) |
| | … | … | … | 2 (7) |
| | … | … | … | 2 (7) |
| | … | … | … | 1 (4) |
Data are presented as no. (%) unless otherwise indicated.
Abbreviations: IQR, interquartile range; ND, not determined.
Figure 1.Proportion of Cryptosporidium species cases for initial patients and human contacts (household contacts and neighboring children), stratified by age.
Figure 2.Frequency of Cryptosporidium gp60 subtypes at the 4 study sites. Frequencies of gp60 subtypes at the 4 study sites are presented for humans (first number) and animals (second number) along with strain and study site totals. The heatmap displays the lowest frequencies in yellow and the highest frequencies in red.
Figure 3.Occurrence of gp60 subtypes over time at the 4 study sites. Gray bars represent Cryptosporidium species infections of unknown subtype. Black lines represent monthly precipitation (in millimeters, z-axis).
Figure 4.Transmission clusters of individual study subjects (circles) with identical gp60 subtypes among contact networks at the different study sites. Cluster structures are displayed, including study subjects infected with the same Cryptosporidium species but lacking gp60 data, which could potentially be related to the detected cases. The occurrence of differing, non-cluster-defining Cryptosporidium species within networks is also shown. Abbreviations: AC, animal contact; C., Cryptosporidium; GA, Gabon; GH, Ghana; HC, household contact; IC, initial case; MG, Madagascar; NC, neighboring child; NW-ID, network identifier as defined in Supplementary Figure 1; TZ, Tanzania.