Literature DB >> 32144650

A fully automated hybrid human sperm detection and classification system based on mobile-net and the performance comparison with conventional methods.

Hamza O Ilhan1, I Onur Sigirci2, Gorkem Serbes3,4, Nizamettin Aydin2.   

Abstract

Sperm morphology, as an indicator of fertility, is a critical tool in semen analysis. In this study, a smartphone-based hybrid system that fully automates the sperm morphological analysis is introduced with the aim of eliminating unwanted human factors. Proposed hybrid system consists of two progressive steps: automatic segmentation of possible sperm shapes and classification of normal/ab-normal sperms. In the segmentation step, clustering techniques with/without group sparsity approach were tested to extract region of interests from the images. Subsequently, a novel publicly available morphological sperm image data set, whose labels were identified by experts as non-sperm, normal and abnormal sperm, was created as the ground truths of classification step. In the classification step, conventional and ensemble machine learning methods were applied to domain-specific features that were extracted by using wavelet transform and descriptors. Additionally, as an alternative to conventional features, three deep neural network architectures, which can extract high-level features from raw images after using statistical learning, were employed to increase the proposed method's performance. The results show that, for the conventional features, the highest classification accuracies were achieved as 80.5% and 83.8% by using the wavelet- and descriptor-based features that were fed to the Support Vector Machines respectively. On the other hand, the Mobile-Net, which is a very convenient network for smartphones, achieved 87% accuracy. In the light of obtained results, it is seen that a fully automatic hybrid system, which uses the group sparsity to enhance segmentation performance and the Mobile-Net to obtain high-level robust features, can be an effective mobile solution for the sperm morphology analysis problem. A fully automated hybrid human sperm detection and classification system based on mobile-net.

Entities:  

Keywords:  Convolution neural networks; Discrete wavelet transform; Group sparsity; Infertility; Sperm abnormality classification; Sperm morphology; Support vector machines

Mesh:

Year:  2020        PMID: 32144650     DOI: 10.1007/s11517-019-02101-y

Source DB:  PubMed          Journal:  Med Biol Eng Comput        ISSN: 0140-0118            Impact factor:   2.602


  28 in total

1.  Wavelet-based statistical approach for speckle reduction in medical ultrasound images.

Authors:  S Gupta; R C Chauhan; S C Sexana
Journal:  Med Biol Eng Comput       Date:  2004-03       Impact factor: 2.602

2.  Texture and moments-based classification of the acrosome integrity of boar spermatozoa images.

Authors:  Enrique Alegre; Víctor González-Castro; Rocío Alaiz-Rodríguez; María Teresa García-Ordás
Journal:  Comput Methods Programs Biomed       Date:  2012-02-29       Impact factor: 5.428

3.  Mother or nothing: the agony of infertility.

Authors:  Weiyuan Cui
Journal:  Bull World Health Organ       Date:  2010-12-01       Impact factor: 9.408

4.  Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning.

Authors:  Babak Alipanahi; Andrew Delong; Matthew T Weirauch; Brendan J Frey
Journal:  Nat Biotechnol       Date:  2015-07-27       Impact factor: 54.908

Review 5.  Computer-assisted sperm analysis (CASA): capabilities and potential developments.

Authors:  Rupert P Amann; Dagmar Waberski
Journal:  Theriogenology       Date:  2014-01-01       Impact factor: 2.740

6.  Dermatologist-level classification of skin cancer with deep neural networks.

Authors:  Andre Esteva; Brett Kuprel; Roberto A Novoa; Justin Ko; Susan M Swetter; Helen M Blau; Sebastian Thrun
Journal:  Nature       Date:  2017-01-25       Impact factor: 49.962

7.  Human-level control through deep reinforcement learning.

Authors:  Volodymyr Mnih; Koray Kavukcuoglu; David Silver; Andrei A Rusu; Joel Veness; Marc G Bellemare; Alex Graves; Martin Riedmiller; Andreas K Fidjeland; Georg Ostrovski; Stig Petersen; Charles Beattie; Amir Sadik; Ioannis Antonoglou; Helen King; Dharshan Kumaran; Daan Wierstra; Shane Legg; Demis Hassabis
Journal:  Nature       Date:  2015-02-26       Impact factor: 49.962

8.  A dictionary learning approach for human sperm heads classification.

Authors:  Fariba Shaker; S Amirhassan Monadjemi; Javad Alirezaie; Ahmad Reza Naghsh-Nilchi
Journal:  Comput Biol Med       Date:  2017-10-10       Impact factor: 4.589

9.  RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease.

Authors:  Hui Y Xiong; Babak Alipanahi; Leo J Lee; Hannes Bretschneider; Daniele Merico; Ryan K C Yuen; Yimin Hua; Serge Gueroussov; Hamed S Najafabadi; Timothy R Hughes; Quaid Morris; Yoseph Barash; Adrian R Krainer; Nebojsa Jojic; Stephen W Scherer; Benjamin J Blencowe; Brendan J Frey
Journal:  Science       Date:  2014-12-18       Impact factor: 47.728

Review 10.  Deep learning for computational biology.

Authors:  Christof Angermueller; Tanel Pärnamaa; Leopold Parts; Oliver Stegle
Journal:  Mol Syst Biol       Date:  2016-07-29       Impact factor: 11.429

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  4 in total

1.  Deep Learning Based Evaluation of Spermatozoid Motility for Artificial Insemination.

Authors:  Viktorija Valiuškaitė; Vidas Raudonis; Rytis Maskeliūnas; Robertas Damaševičius; Tomas Krilavičius
Journal:  Sensors (Basel)       Date:  2020-12-24       Impact factor: 3.576

2.  Decision and feature level fusion of deep features extracted from public COVID-19 data-sets.

Authors:  Hamza Osman Ilhan; Gorkem Serbes; Nizamettin Aydin
Journal:  Appl Intell (Dordr)       Date:  2021-10-30       Impact factor: 5.019

3.  A new deep-learning model using YOLOv3 to support sperm selection during intracytoplasmic sperm injection procedure.

Authors:  Takuma Sato; Hiroshi Kishi; Saori Murakata; Yuki Hayashi; Toshiyuki Hattori; Shinji Nakazawa; Yusuke Mori; Miwa Hidaka; Yuta Kasahara; Atsuko Kusuhara; Kayo Hosoya; Hiroshi Hayashi; Aikou Okamoto
Journal:  Reprod Med Biol       Date:  2022-04-04

4.  Microfeature Segmentation Algorithm for Biological Images Using Improved Density Peak Clustering.

Authors:  Man Li; Haiyin Sha; Hongying Liu
Journal:  Comput Math Methods Med       Date:  2022-08-18       Impact factor: 2.809

  4 in total

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