| Literature DB >> 32142137 |
Sara Rosenthal1, Subhro Das2, Pei-Yun Sabrina Hsueh1, Ken Barker1, Ching-Hua Chen1.
Abstract
OBJECTIVE: To improve efficient goal attainment of patients by analyzing the unstructured text in care manager (CM) notes (CMNs). Our task is to determine whether the goal assigned by the CM can be achieved in a timely manner.Entities:
Keywords: evidence-based healthcare management; natural language processing; patient engagement; supervised machine learning
Year: 2020 PMID: 32142137 PMCID: PMC7309242 DOI: 10.1093/jamiaopen/ooaa001
Source DB: PubMed Journal: J Am Med Inform Assoc ISSN: 1067-5027 Impact factor: 4.497
Figure 1.Summary statistics of the GOAL dataset. Efficient goal attainment is defined as achieving the assigned goal in less than 2 weeks.
Descriptions and anecdotal examples for engagement and lack of engagement
| Label | Description | Examples |
|---|---|---|
| Engagement with care | The patient is engaged in their well-being by describing/exhibiting healthy behavior, positive outlook, and social ties. | “Patient disappointed by lack of weight loss but is just beginning exercise regimen”; “Patient joined book club.” |
| Engagement with care manager | Adherence to a doctor or CM instruction or understanding of CM advice. | “Patient verbalized understanding”; “Patient confided that she has gaps in nitroglycerin use.” |
| Lack of engagement with care | Lack of engagement by using language suggestive of non-adherence to guidelines, health-adverse behavior, lack of social ties, or negative impression of patient self-care. | “White female, disheveled appearance”; “Patient admits to ‘sedentary’ lifestyle.” |
| Lack of engagement with care manager | Non-adherence to a prescribed instruction or a negative response to interaction. | “Patient rude during call”; “Patient angrily refused further outreach.” |
Figure 2.The pipeline of the entire system. The left portion illustrates the typical role of the care manager in the patients care. The right portion illustrates how our system aids the care manager.
Precision, recall, and F-score results for engagement prediction using SVM, RNN, and BERT models
| Engagement | Lack of engagement | Average | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Model | Datasets |
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| SVM | CM | 0.80 | 0.93 | 0.86 | 0.91 | 0.75 | 0.83 | 0.85 | 0.85 | 0.85 |
| SVM | CM + Twitter | 0.83 | 0.98 | 0.90 | 0.98 | 0.79 | 0.87 | 0.89 | 0.89 | 0.89 |
| RNN | CM | 0.83 | 0.90 | 0.87 | 0.88 | 0.81 | 0.84 | 0.86 | 0.86 | 0.86 |
| RNN | CM + Twitter | 0.82 | 0.92 | 0.87 | 0.90 | 0.79 | 0.84 | 0.86 | 0.86 | 0.86 |
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| CM | 0.95 | 0.95 | 0.95 | 0.95 | 0.95 | 0.95 | 0.95 | 0.95 | 0.95 |
Note: Significantly outperforms all other models (SVM CM + Twitter P-value ≤ 0.1 and all other models P-value ≤ 0.01.)
The 5-fold cross-validation results for efficient goal attainment prediction in terms of accuracy, precision, recall, and F-score for the structural (struct), engagement (eng), n-grams, and engagement-oriented n-grams (eng_n-grams) groups of features
| Average |
| >2 weeks | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Majority (all efficient) |
| 0.44 | 0.50 | 0.47 |
| 0.87 | 1.00 |
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| 0.00 | 0.00 | 0.00 |
| minority (all inefficient) | 0.13 | 0.06 | 0.50 | 0.11 | 0.13 | 0.00 | 0.00 | 0.00 | 0.13 | 0.13 |
| 0.23 |
| struct | 0.72 | 0.63 |
| 0.63 | 0.72 |
| 0.71 | 0.82 | 0.72 | 0.29 | 0.83 | 0.43 |
|
| 0.74 | 0.63 |
| 0.64 | 0.74 | 0.96 | 0.73 | 0.83 | 0.74 | 0.30 | 0.81 | 0.44 |
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| 0.77 |
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| 0.77 | 0.96 | 0.77 | 0.85 | 0.77 |
| 0.78 |
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| 0.76 | 0.64 |
| 0.65 | 0.76 | 0.96 | 0.76 | 0.85 | 0.76 |
| 0.79 |
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| n-grams | 0.72 | 0.62 | 0.75 | 0.62 | 0.72 | 0.96 | 0.71 | 0.81 | 0.72 | 0.28 | 0.79 | 0.42 |
| eng_n-grams | 0.64 | 0.59 | 0.70 | 0.55 | 0.64 | 0.95 | 0.62 | 0.75 | 0.64 | 0.23 | 0.77 | 0.36 |
Note: All models significantly beat the Average F-score for the baselines and the underlined models significantly beat the Average F-score of the struct model with P-value ≤ 0.001. The boldface values indicate the highest score in each column.
The top n-grams for each class sorted by frequency of occurrence in the cross-validation folds
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| # folds | >2 weeks | # folds | |
|---|---|---|---|---|
| 1 | wh ( | 4 | Home patient | 5 |
| 2 | Needs arise | 4 | pt ( | 4 |
| 3 | Welcome | 4 | hh ( | 4 |
| 4 | dm ( | 4 | Discharge | 3 |
| 5 | Left | 3 | didn | 3 |
| 6 | Did questions | 2 | Patient admitted | 3 |
| 7 | Completed | 2 | Fever | 2 |
| 8 | Needed | 1 | Medications | 2 |
| 9 | Health | 1 | Informed | 2 |
| 10 | Therapy | 1 | pt ( | 1 |
| 11 | 2017 | 1 | Discharged | 1 |
| 12 | Questions concerns | 1 | Arise | 1 |
| 13 | Symptoms | 1 | Denies | 1 |
Note: The acronym expansions provided in parenthesis are shown for clarity but do not appear in the notes.