Literature DB >> 32141793

Genome-Wide Association Study of Ocular Sarcoidosis Confirms HLA Associations and Implicates Barrier Function and Autoimmunity in African Americans.

Lori Garman1, Nathan Pezant1, Ambra Pastori1, Kathryn A Savoy1, Chuang Li1, Albert M Levin2, Michael C Iannuzzi3, Benjamin A Rybicki2, Indra Adrianto1,2, Courtney G Montgomery1.   

Abstract

Purpose: Identify genes associated with ocular sarcoidosis (OS).
Methods: We genotyped 1.1 million genetic variants to identify significant OS associations, defined as those that achieved p < 5 × 10-8 in a genome-wide comparison of OS cases to healthy controls in our European- or African-American cohorts (EA, AA). Potential functional roles of all associated variants were assessed.
Results: Eight significant non-HLA variants were found in AA OS cases compared to healthy controls and confirmed as at least suggestive when comparing OS to non-OS cases. Seven of these were within MAGI1 and include transcription factor binding sites and expression quantitative trait loci. Our EA cohort, while showing similar effect sizes at variants within MAGI1, had no significant variants. Association analysis of HLA-DRB1 alleles confirmed association to OS in EA to *04:01.
Conclusion: Our results support organ-specific genetic risk in OS in a compelling candidate, MAGI1, known to be associated with barrier function and autoimmunity.

Entities:  

Keywords:  GWAS; HLA-DRB1*04:01; MAGI1; Sarcoidosis; ocular

Year:  2020        PMID: 32141793      PMCID: PMC7483204          DOI: 10.1080/09273948.2019.1705985

Source DB:  PubMed          Journal:  Ocul Immunol Inflamm        ISSN: 0927-3948            Impact factor:   3.070


  39 in total

1.  Role of NOD2 Pathway Genes in Sarcoidosis Cases with Clinical Characteristics of Blau Syndrome.

Authors:  Ghalib A Bello; Indra Adrianto; Gerard G Dumancas; Albert M Levin; Michael C Iannuzzi; Benjamin A Rybicki; Courtney Montgomery
Journal:  Am J Respir Crit Care Med       Date:  2015-11-01       Impact factor: 21.405

2.  Human metabolic individuality in biomedical and pharmaceutical research.

Authors:  So-Youn Shin; Ann-Kristin Petersen; Nicole Soranzo; Christian Gieger; Karsten Suhre; Robert P Mohney; David Meredith; Brigitte Wägele; Elisabeth Altmaier; Panos Deloukas; Jeanette Erdmann; Elin Grundberg; Christopher J Hammond; Martin Hrabé de Angelis; Gabi Kastenmüller; Anna Köttgen; Florian Kronenberg; Massimo Mangino; Christa Meisinger; Thomas Meitinger; Hans-Werner Mewes; Michael V Milburn; Cornelia Prehn; Johannes Raffler; Janina S Ried; Werner Römisch-Margl; Nilesh J Samani; Kerrin S Small; H-Erich Wichmann; Guangju Zhai; Thomas Illig; Tim D Spector; Jerzy Adamski
Journal:  Nature       Date:  2011-08-31       Impact factor: 49.962

Review 3.  Racial differences in sarcoidosis incidence: a 5-year study in a health maintenance organization.

Authors:  B A Rybicki; M Major; J Popovich; M J Maliarik; M C Iannuzzi
Journal:  Am J Epidemiol       Date:  1997-02-01       Impact factor: 4.897

4.  EnhancerAtlas: a resource for enhancer annotation and analysis in 105 human cell/tissue types.

Authors:  Tianshun Gao; Bing He; Sheng Liu; Heng Zhu; Kai Tan; Jiang Qian
Journal:  Bioinformatics       Date:  2016-08-10       Impact factor: 6.937

5.  HSP70-hom gene single nucleotide (+2763 G/A and +2437 C/T) polymorphisms in sarcoidosis.

Authors:  K Bogunia-Kubik; K Koscinska; K Suchnicki; A Lange
Journal:  Int J Immunogenet       Date:  2006-04       Impact factor: 1.466

6.  HLA-DRB1*1101: a significant risk factor for sarcoidosis in blacks and whites.

Authors:  Milton D Rossman; Bruce Thompson; Margaret Frederick; Mary Maliarik; Michael C Iannuzzi; Benjamin A Rybicki; Janardan P Pandey; Lee S Newman; Eleni Magira; Bojana Beznik-Cizman; Dimitri Monos
Journal:  Am J Hum Genet       Date:  2003-08-20       Impact factor: 11.025

7.  MAGI-1 Interacts with Nephrin to Maintain Slit Diaphragm Structure through Enhanced Rap1 Activation in Podocytes.

Authors:  Jie Ni; Sujin Bao; Ruth I Johnson; Bingbing Zhu; Jianhua Li; Justin Vadaparampil; Christopher M Smith; Kirk N Campbell; Florian Grahammer; Tobias B Huber; John C He; Vivette D D'Agati; Andrew Chan; Lewis Kaufman
Journal:  J Biol Chem       Date:  2016-10-05       Impact factor: 5.157

8.  Drosophila MAGI interacts with RASSF8 to regulate E-Cadherin-based adherens junctions in the developing eye.

Authors:  Sophie Zaessinger; Yanxiang Zhou; Sarah J Bray; Nicolas Tapon; Alexandre Djiane
Journal:  Development       Date:  2015-02-27       Impact factor: 6.868

9.  HaploReg v4: systematic mining of putative causal variants, cell types, regulators and target genes for human complex traits and disease.

Authors:  Lucas D Ward; Manolis Kellis
Journal:  Nucleic Acids Res       Date:  2015-12-10       Impact factor: 16.971

10.  Association of genetic variants in RAB23 and ANXA11 with uveitis in sarcoidosis.

Authors:  Samaneh Davoudi; Victoria S Chang; Daniel Navarro-Gomez; Lynn K Stanwyck; Damla Duriye Sevgi; Evangelia Papavasileiou; Aiai Ren; Eduardo Uchiyama; Lynn Sullivan; Ann-Marie Lobo; George N Papaliodis; Lucia Sobrin
Journal:  Mol Vis       Date:  2018-01-21       Impact factor: 2.367

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  6 in total

Review 1.  Molecular profiling in sarcoidosis.

Authors:  Nicholas K Arger; Brian O'Connor; Laura L Koth
Journal:  Curr Opin Pulm Med       Date:  2020-09       Impact factor: 3.155

2.  A new look into uveitis in Colombia: changes in distribution patterns and clinical characteristics over the last 25 years.

Authors:  Diego Polanía; Juliana Reyes-Guanes; William Rojas-Carabali; Daniella Pardo-Pizza; Doménico Barraquer-Lopez; Carlos Cifuentes-González; Natalia Neira-Segura; Alejandra de-la-Torre
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2022-08-22       Impact factor: 3.535

Review 3.  The Evolving Landscape of Cutaneous Sarcoidosis: Pathogenic Insight, Clinical Challenges, and New Frontiers in Therapy.

Authors:  Julie H Wu; Sotonye Imadojemu; Avrom S Caplan
Journal:  Am J Clin Dermatol       Date:  2022-05-18       Impact factor: 6.233

4.  New Insights on the Regulatory Gene Network Disturbed in Central Areolar Choroidal Dystrophy-Beyond Classical Gene Candidates.

Authors:  João Paulo Kazmierczak de Camargo; Giovanna Nazaré de Barros Prezia; Naoye Shiokawa; Mario Teruo Sato; Roberto Rosati; Angelica Beate Winter Boldt
Journal:  Front Genet       Date:  2022-05-17       Impact factor: 4.772

Review 5.  Pathogenesis of Non-Infectious Uveitis Elucidated by Recent Genetic Findings.

Authors:  Masaki Takeuchi; Nobuhisa Mizuki; Shigeaki Ohno
Journal:  Front Immunol       Date:  2021-04-12       Impact factor: 7.561

Review 6.  Offense and Defense in Granulomatous Inflammation Disease.

Authors:  Xinwen Wang; Yuan Liu
Journal:  Front Cell Infect Microbiol       Date:  2022-06-29       Impact factor: 6.073

  6 in total

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