| Literature DB >> 32141624 |
Yaqing Fang1, Yiting Nie2, Marshare Penny3.
Abstract
Using the parameterized susceptible-exposed-infectious-recovered model, we simulated the spread dynamics of coronavirus disease 2019 (COVID-19) outbreak and impact of different control measures, conducted the sensitivity analysis to identify the key factor, plotted the trend curve of effective reproductive number (R), and performed data fitting after the simulation. By simulation and data fitting, the model showed the peak existing confirmed cases of 59 769 arriving on 15 February 2020, with the coefficient of determination close to 1 and the fitting bias 3.02%, suggesting high precision of the data-fitting results. More rigorous government control policies were associated with a slower increase in the infected population. Isolation and protective procedures would be less effective as more cases accrue, so the optimization of the treatment plan and the development of specific drugs would be of more importance. There was an upward trend of R in the beginning, followed by a downward trend, a temporary rebound, and another continuous decline. The feature of high infectiousness for severe acute respiratory syndrome coronavirus 2(SARS-CoV-2) led to an upward trend, and government measures contributed to the temporary rebound and declines. The declines of R could be exploited as strong evidence for the effectiveness of the interventions. Evidence from the four-phase stringent measures showed that it was significant to ensure early detection, early isolation, early treatment, adequate medical supplies, patients' being admitted to designated hospitals, and comprehensive therapeutic strategy. Collaborative efforts are required to combat the novel coronavirus, focusing on both persistent strict domestic interventions and vigilance against exogenous imported cases.Entities:
Keywords: COVID-19; SARS-CoV-2; SEIR; basic reproductive number; data fitting; data simulation; effective reproductive number; effectiveness; intervention; sensitivity analysis; transmission
Mesh:
Year: 2020 PMID: 32141624 PMCID: PMC7228381 DOI: 10.1002/jmv.25750
Source DB: PubMed Journal: J Med Virol ISSN: 0146-6615 Impact factor: 20.693
Figure 1The distribution of existing confirmed COVID‐19 cases in Hubei, China, and worldwide. COVID‐19, coronavirus disease 2019
Figure 2The trend of existing confirmed cases in China and overseas
Figure 3Dynamics of COVID‐19 based on the SEIR model. COVID‐19, coronavirus disease 2019; SEIR, susceptible‐exposed‐infectious‐recovered
Different government control measures and corresponding k values
| No. | Date | Government Measures |
|
|---|---|---|---|
| 1 | 29 December 2019 to 22 January 2020 | Early detection of the SARS‐CoV‐2 |
|
| Preliminary control | |||
| 2 | 23 January‐29 January 2020 | (1) Public health level 1 response of 31 provinces |
|
| (2) Strict exit screening | |||
| (3) Medical support from other regions of China | |||
| (4) Cancellation of mass gatherings | |||
| (5) Methodological improvement on the diagnosis and treatment strategy | |||
| 3 | 30 January‐11 February 2020 | (1) Public health level 1 response of 31 provinces |
|
| (2) Strict exit screening | |||
| (3) Domestic and international medical support | |||
| (4) The larger scale of cancellation of mass gatherings | |||
| (5) Further methodological improvement on the diagnosis and treatment strategy | |||
| (6) Spontaneous household quarantine by citizens | |||
| (7) Two newly built hospitals’ put into use | |||
| (8) A clinical trial of perspective medicines | |||
| 4 | 12 February‐20 February 2020 | (1) Public health level 1 response of 31 provinces |
|
| (2) Strict exit screening | |||
| (3) Further medical support from home and abroad | |||
| (4) Massive online teaching in a postponed semester | |||
| (5) Orderly resumption of back to work | |||
| (6) Addition of new diagnosis method—clinically diagnosis in Hubei province | |||
| (7) Interagency mechanism | |||
| (8) Further exploration of effective therapeutic strategy |
Abbreviation: SARS‐CoV‐2, severe acute respiratory syndrome coronavirus 2.
Figure 4S value simulation curve of susceptible population
Figure 5I value the simulation curve of the infected population
Figure 6Daily number of new recovered cases and new confirmed cases in China
Figure 7Sensitivity analysis of different parameters
Figure 8R values from 20 January to 29 February 2020
Figure 9The trend of R values overtime
Figure 10Results of Dickey‐Fuller test
Figure 11Data decomposed into time series
Figure 12Data fitting by polyregression
Figure 13Result of grid search No. 1
Figure 14The top five parameters. MSE, mean square error
Figure 15Predict linear
Figure 16The SEIR model simulation of COVID‐19 after data fitting. COVID‐19, coronavirus disease 2019; SEIR, susceptible‐exposed‐infectious‐recovered