Literature DB >> 32133733

Standard guidelines for the publication of telomere qPCR results in evolutionary ecology.

Francisco Morinha1, Paula Magalhães2,3, Guillermo Blanco1.   

Abstract

Telomere length has been used as a proxy of fitness, aging and lifespan in vertebrates. In the last decade, dozens of articles reporting on telomere dynamics in the fields of ecology and evolution have been published for a wide range of taxa. With this growing interest, it is necessary to ensure the accuracy and reproducibility of telomere length measurement techniques. Real-time quantitative PCR (qPCR) is routinely applied to measure relative telomere length. However, this technique is highly sensitive to several methodological variables and the optimization of qPCR telomere assays remains highly variable between studies. Therefore, standardized guidelines are required to enable the optimization of robust protocols, and to help in judging the validity of the presented results. This review provides an overview of preanalytical and analytical factors that can lead to qPCR inconsistencies and biases, including: (a) sample type, collection and storage; (b) DNA extraction, storage and quality; (c) qPCR primers, laboratory reagents, and assay conditions; and (d) data analysis. We propose a minimum level of information for publication of qPCR telomere assays in evolutionary ecology considering the methodological pitfalls and sources of error. This review highlights the complexity of the optimization and validation of qPCR for telomere measurement per se, demonstrating the importance of transparency and clarity of reporting methodological details required for reliable, reproducible and comparable qPCR telomere assays. We encourage efforts to implement standardized protocols that ensure the rigour and quality of telomere dynamics studies.
© 2020 John Wiley & Sons Ltd.

Keywords:  DNA extraction; qPCR conditions; real-time quantitative PCR; sampling; telomere measurement

Mesh:

Substances:

Year:  2020        PMID: 32133733     DOI: 10.1111/1755-0998.13152

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  6 in total

1.  Telomere length correlates with physiological and behavioural responses of a long-lived seabird to an ecologically relevant challenge.

Authors:  Z M Benowitz-Fredericks; L M Lacey; S Whelan; A P Will; S A Hatch; A S Kitaysky
Journal:  Proc Biol Sci       Date:  2022-07-13       Impact factor: 5.530

2.  Method comparison studies of telomere length measurement using qPCR approaches: A critical appraisal of the literature.

Authors:  Alyssa R Lindrose; Lauren W Y McLester-Davis; Renee I Tristano; Leila Kataria; Shahinaz M Gadalla; Dan T A Eisenberg; Simon Verhulst; Stacy Drury
Journal:  PLoS One       Date:  2021-01-20       Impact factor: 3.240

3.  Telomere lengths correlate with fitness but assortative mating by telomeres confers no benefit to fledgling recruitment.

Authors:  Rebecca C Young; Alexander S Kitaysky; Hugh M Drummond
Journal:  Sci Rep       Date:  2021-03-09       Impact factor: 4.379

Review 4.  Molecular insight of dyskeratosis congenita: Defects in telomere length homeostasis.

Authors:  Saeed Dorgaleleh; Karim Naghipoor; Zahra Hajimohammadi; Farzad Dastaviz; Morteza Oladnabi
Journal:  J Clin Transl Res       Date:  2022-01-03

Review 5.  Stress and telomere shortening: Insights from cellular mechanisms.

Authors:  Jue Lin; Elissa Epel
Journal:  Ageing Res Rev       Date:  2021-11-01       Impact factor: 10.895

Review 6.  Association between Childhood Exposure to Family Violence and Telomere Length: A Meta-Analysis.

Authors:  Xiao Yan Chen; Camilla K M Lo; Ko Ling Chan; Wing Cheong Leung; Patrick Ip
Journal:  Int J Environ Res Public Health       Date:  2022-09-26       Impact factor: 4.614

  6 in total

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