Literature DB >> 32127690

Beyond broad strokes: sociocultural insights from the study of ancient genomes.

Fernando Racimo1, Martin Sikora2, Marc Vander Linden3, Hannes Schroeder2, Carles Lalueza-Fox4.   

Abstract

In the field of human history, ancient DNA has provided answers to long-standing debates about major movements of people and has begun to inform on other important facets of the human experience. The field is now moving from mostly large-scale supraregional studies to a more local perspective, shedding light on socioeconomic processes, inheritance rules, marriage practices and technological diffusion. In this Review, we summarize recent studies showcasing these types of insights, focusing on methods used to infer sociocultural aspects of human behaviour. This approach often involves working across disciplines - such as anthropology, archaeology, linguistics and genetics - that have until recently evolved in separation. Multidisciplinary dialogue is important for an integrated reconstruction of human history, which can yield extraordinary insights about past societies, reproductive behaviours and even lifestyle habits that would not be possible to obtain otherwise.

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Year:  2020        PMID: 32127690     DOI: 10.1038/s41576-020-0218-z

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  94 in total

Review 1.  Ancient DNA.

Authors:  M Hofreiter; D Serre; H N Poinar; M Kuch; S Pääbo
Journal:  Nat Rev Genet       Date:  2001-05       Impact factor: 53.242

2.  Length and GC-biases during sequencing library amplification: a comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries.

Authors:  Jesse Dabney; Matthias Meyer
Journal:  Biotechniques       Date:  2012-02       Impact factor: 1.993

Review 3.  Ancient DNA.

Authors:  Eske Willerslev; Alan Cooper
Journal:  Proc Biol Sci       Date:  2005-01-07       Impact factor: 5.349

4.  A minimally-invasive method for sampling human petrous bones from the cranial base for ancient DNA analysis.

Authors:  Kendra A Sirak; Daniel M Fernandes; Olivia Cheronet; Mario Novak; Beatriz Gamarra; Tímea Balassa; Zsolt Bernert; Andrea Cséki; János Dani; József Zsolt Gallina; Gábor Kocsis-Buruzs; Ivett Kővári; Orsolya László; Ildikó Pap; Róbert Patay; Zsolt Petkes; Gergely Szenthe; Tamás Szeniczey; Tamás Hajdu; Ron Pinhasi
Journal:  Biotechniques       Date:  2017-06-01       Impact factor: 1.993

5.  A high-coverage genome sequence from an archaic Denisovan individual.

Authors:  Matthias Meyer; Martin Kircher; Marie-Theres Gansauge; Heng Li; Fernando Racimo; Swapan Mallick; Joshua G Schraiber; Flora Jay; Kay Prüfer; Cesare de Filippo; Peter H Sudmant; Can Alkan; Qiaomei Fu; Ron Do; Nadin Rohland; Arti Tandon; Michael Siebauer; Richard E Green; Katarzyna Bryc; Adrian W Briggs; Udo Stenzel; Jesse Dabney; Jay Shendure; Jacob Kitzman; Michael F Hammer; Michael V Shunkov; Anatoli P Derevianko; Nick Patterson; Aida M Andrés; Evan E Eichler; Montgomery Slatkin; David Reich; Janet Kelso; Svante Pääbo
Journal:  Science       Date:  2012-08-30       Impact factor: 47.728

6.  Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA.

Authors:  Marie-Theres Gansauge; Matthias Meyer
Journal:  Nat Protoc       Date:  2013-03-14       Impact factor: 13.491

7.  Experimental conditions improving in-solution target enrichment for ancient DNA.

Authors:  Diana I Cruz-Dávalos; Bastien Llamas; Charleen Gaunitz; Antoine Fages; Cristina Gamba; Julien Soubrier; Pablo Librado; Andaine Seguin-Orlando; Mélanie Pruvost; Ahmed H Alfarhan; Saleh A Alquraishi; Khaled A S Al-Rasheid; Amelie Scheu; Norbert Beneke; Arne Ludwig; Alan Cooper; Eske Willerslev; Ludovic Orlando
Journal:  Mol Ecol Resour       Date:  2016-09-18       Impact factor: 7.090

8.  Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform.

Authors:  Martin Kircher; Susanna Sawyer; Matthias Meyer
Journal:  Nucleic Acids Res       Date:  2011-10-21       Impact factor: 16.971

9.  Optimal Ancient DNA Yields from the Inner Ear Part of the Human Petrous Bone.

Authors:  Ron Pinhasi; Daniel Fernandes; Kendra Sirak; Mario Novak; Sarah Connell; Songül Alpaslan-Roodenberg; Fokke Gerritsen; Vyacheslav Moiseyev; Andrey Gromov; Pál Raczky; Alexandra Anders; Michael Pietrusewsky; Gary Rollefson; Marija Jovanovic; Hiep Trinhhoang; Guy Bar-Oz; Marc Oxenham; Hirofumi Matsumura; Michael Hofreiter
Journal:  PLoS One       Date:  2015-06-18       Impact factor: 3.240

10.  Improving access to endogenous DNA in ancient bones and teeth.

Authors:  Peter B Damgaard; Ashot Margaryan; Hannes Schroeder; Ludovic Orlando; Eske Willerslev; Morten E Allentoft
Journal:  Sci Rep       Date:  2015-06-17       Impact factor: 4.379

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  8 in total

1.  Better together.

Authors: 
Journal:  Nat Rev Genet       Date:  2020-06       Impact factor: 53.242

Review 2.  Generations of genomes: advances in paleogenomics technology and engagement for Indigenous people of the Americas.

Authors:  Krystal S Tsosie; Rene L Begay; Keolu Fox; Nanibaa' A Garrison
Journal:  Curr Opin Genet Dev       Date:  2020-07-25       Impact factor: 5.578

3.  The genomic origins of the world's first farmers.

Authors:  Nina Marchi; Laura Winkelbach; Ilektra Schulz; Maxime Brami; Zuzana Hofmanová; Jens Blöcher; Carlos S Reyna-Blanco; Yoan Diekmann; Alexandre Thiéry; Adamandia Kapopoulou; Vivian Link; Valérie Piuz; Susanne Kreutzer; Sylwia M Figarska; Elissavet Ganiatsou; Albert Pukaj; Travis J Struck; Ryan N Gutenkunst; Necmi Karul; Fokke Gerritsen; Joachim Pechtl; Joris Peters; Andrea Zeeb-Lanz; Eva Lenneis; Maria Teschler-Nicola; Sevasti Triantaphyllou; Sofija Stefanović; Christina Papageorgopoulou; Daniel Wegmann; Joachim Burger; Laurent Excoffier
Journal:  Cell       Date:  2022-05-12       Impact factor: 66.850

Review 4.  Peopling of the Americas as inferred from ancient genomics.

Authors:  Eske Willerslev; David J Meltzer
Journal:  Nature       Date:  2021-06-16       Impact factor: 49.962

5.  Ancient genomes provide insights into family structure and the heredity of social status in the early Bronze Age of southeastern Europe.

Authors:  A Žegarac; L Winkelbach; J Blöcher; Y Diekmann; M Krečković Gavrilović; M Porčić; B Stojković; L Milašinović; M Schreiber; D Wegmann; K R Veeramah; S Stefanović; J Burger
Journal:  Sci Rep       Date:  2021-05-12       Impact factor: 4.379

6.  Parental relatedness through time revealed by runs of homozygosity in ancient DNA.

Authors:  John Novembre; Matthias Steinrücken; Harald Ringbauer
Journal:  Nat Commun       Date:  2021-09-14       Impact factor: 14.919

7.  A curated dataset of modern and ancient high-coverage shotgun human genomes.

Authors:  Pierpaolo Maisano Delser; Eppie R Jones; Anahit Hovhannisyan; Lara Cassidy; Ron Pinhasi; Andrea Manica
Journal:  Sci Data       Date:  2021-08-04       Impact factor: 6.444

8.  Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment.

Authors:  Pere Gelabert; Susanna Sawyer; Anders Bergström; Ashot Margaryan; Thomas C Collin; Tengiz Meshveliani; Anna Belfer-Cohen; David Lordkipanidze; Nino Jakeli; Zinovi Matskevich; Guy Bar-Oz; Daniel M Fernandes; Olivia Cheronet; Kadir T Özdoğan; Victoria Oberreiter; Robin N M Feeney; Mareike C Stahlschmidt; Pontus Skoglund; Ron Pinhasi
Journal:  Curr Biol       Date:  2021-07-12       Impact factor: 10.834

  8 in total

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