Literature DB >> 35980580

Studying Protein Function Using Nanobodies and Other Protein Binders in Drosophila.

Katarzyna Lepeta1, Milena Bauer1, Gustavo Aguilar1, M Alessandra Vigano1, Shinya Matsuda1, Markus Affolter2.   

Abstract

The direct manipulation of proteins by nanobodies and other protein binders has become an additional and valuable approach to investigate development and homeostasis in Drosophila. In contrast to other techniques, that indirectly interfere with proteins via their nucleic acids (CRISPR, RNAi, etc.), protein binders permit direct and acute protein manipulation. Since the first use of a nanobody in Drosophila a decade ago, many different applications exploiting protein binders have been introduced. Most of these applications use nanobodies against GFP to regulate GFP fusion proteins. In order to exert specific protein manipulations, protein binders are linked to domains that confer them precise biochemical functions. Here, we reflect on the use of tools based on protein binders in Drosophila. We describe their key features and provide an overview of the available reagents. Finally, we briefly explore the future avenues that protein binders might open up and thus further contribute to better understand development and homeostasis of multicellular organisms.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  DARPins; Development; Drosophila; GFP; Nanobodies; Protein Binders

Mesh:

Substances:

Year:  2022        PMID: 35980580     DOI: 10.1007/978-1-0716-2541-5_10

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  59 in total

1.  A protein trap strategy to detect GFP-tagged proteins expressed from their endogenous loci in Drosophila.

Authors:  X Morin; R Daneman; M Zavortink; W Chia
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-11       Impact factor: 11.205

2.  Fluorescent fusion protein knockout mediated by anti-GFP nanobody.

Authors:  Emmanuel Caussinus; Oguz Kanca; Markus Affolter
Journal:  Nat Struct Mol Biol       Date:  2011-12-11       Impact factor: 15.369

Review 3.  Designed ankyrin repeat proteins (DARPins): binding proteins for research, diagnostics, and therapy.

Authors:  Andreas Plückthun
Journal:  Annu Rev Pharmacol Toxicol       Date:  2015       Impact factor: 13.820

Review 4.  Recent progress in generating intracellular functional antibody fragments to target and trace cellular components in living cells.

Authors:  Philipp D Kaiser; Julia Maier; Bjoern Traenkle; Felix Emele; Ulrich Rothbauer
Journal:  Biochim Biophys Acta       Date:  2014-05-02

5.  Engrailed homeoprotein acts as a signaling molecule in the developing fly.

Authors:  Sophie Layalle; Michel Volovitch; Bruno Mugat; Nathalie Bonneaud; Marie-Laure Parmentier; Alain Prochiantz; Alain Joliot; Florence Maschat
Journal:  Development       Date:  2011-06       Impact factor: 6.868

Review 6.  Protein homeostasis: live long, won't prosper.

Authors:  Brandon H Toyama; Martin W Hetzer
Journal:  Nat Rev Mol Cell Biol       Date:  2013-01       Impact factor: 94.444

7.  The carnegie protein trap library: a versatile tool for Drosophila developmental studies.

Authors:  Michael Buszczak; Shelley Paterno; Daniel Lighthouse; Julia Bachman; Jamie Planck; Stephenie Owen; Andrew D Skora; Todd G Nystul; Benjamin Ohlstein; Anna Allen; James E Wilhelm; Terence D Murphy; Robert W Levis; Erika Matunis; Nahathai Srivali; Roger A Hoskins; Allan C Spradling
Journal:  Genetics       Date:  2006-12-28       Impact factor: 4.562

Review 8.  Nanobodies and recombinant binders in cell biology.

Authors:  Jonas Helma; M Cristina Cardoso; Serge Muyldermans; Heinrich Leonhardt
Journal:  J Cell Biol       Date:  2015-06-08       Impact factor: 10.539

9.  PAPTi: a peptide aptamer interference toolkit for perturbation of protein-protein interaction networks.

Authors:  Johannes T-H Yeh; Richard Binari; Tenzin Gocha; Ramanuj Dasgupta; Norbert Perrimon
Journal:  Sci Rep       Date:  2013-01-29       Impact factor: 4.379

Review 10.  Nanobody Technology: A Versatile Toolkit for Microscopic Imaging, Protein-Protein Interaction Analysis, and Protein Function Exploration.

Authors:  Els Beghein; Jan Gettemans
Journal:  Front Immunol       Date:  2017-07-04       Impact factor: 7.561

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  1 in total

1.  Engineered kinases as a tool for phosphorylation of selected targets in vivo.

Authors:  Katarzyna Lepeta; Chantal Roubinet; Milena Bauer; M Alessandra Vigano; Gustavo Aguilar; Oguz Kanca; Amanda Ochoa-Espinosa; Dimitri Bieli; Clemens Cabernard; Emmanuel Caussinus; Markus Affolter
Journal:  J Cell Biol       Date:  2022-09-14       Impact factor: 8.077

  1 in total

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