Literature DB >> 32113345

Small protein number effects in stochastic models of autoregulated bursty gene expression.

Chen Jia1, Ramon Grima2.   

Abstract

A stochastic model of autoregulated bursty gene expression by Kumar et al. [Phys. Rev. Lett. 113, 268105 (2014)] has been exactly solved in steady-state conditions under the implicit assumption that protein numbers are sufficiently large such that fluctuations in protein numbers due to reversible protein-promoter binding can be ignored. Here, we derive an alternative model that takes into account these fluctuations and, hence, can be used to study low protein number effects. The exact steady-state protein number distribution is derived as a sum of Gaussian hypergeometric functions. We use the theory to study how promoter switching rates and the type of feedback influence the size of protein noise and noise-induced bistability. Furthermore, we show that our model predictions for the protein number distribution are significantly different from those of Kumar et al. when the protein mean is small, gene switching is fast, and protein binding to the gene is faster than the reverse unbinding reaction.

Year:  2020        PMID: 32113345     DOI: 10.1063/1.5144578

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  7 in total

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3.  Pathway dynamics can delineate the sources of transcriptional noise in gene expression.

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4.  Inference and uncertainty quantification of stochastic gene expression via synthetic models.

Authors:  Kaan Öcal; Michael U Gutmann; Guido Sanguinetti; Ramon Grima
Journal:  J R Soc Interface       Date:  2022-07-13       Impact factor: 4.293

5.  Universally valid reduction of multiscale stochastic biochemical systems using simple non-elementary propensities.

Authors:  Yun Min Song; Hyukpyo Hong; Jae Kyoung Kim
Journal:  PLoS Comput Biol       Date:  2021-10-18       Impact factor: 4.475

6.  Approximating solutions of the Chemical Master equation using neural networks.

Authors:  Augustinas Sukys; Kaan Öcal; Ramon Grima
Journal:  iScience       Date:  2022-08-27

7.  Concentration fluctuations in growing and dividing cells: Insights into the emergence of concentration homeostasis.

Authors:  Chen Jia; Abhyudai Singh; Ramon Grima
Journal:  PLoS Comput Biol       Date:  2022-10-04       Impact factor: 4.779

  7 in total

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