Literature DB >> 32108112

Polymerization in the actin ATPase clan regulates hexokinase activity in yeast.

Patrick R Stoddard1,2, Eric M Lynch3, Daniel P Farrell3,4, Annie M Dosey3, Frank DiMaio3,4, Tom A Williams5, Justin M Kollman3, Andrew W Murray6,2, Ethan C Garner6,2.   

Abstract

The actin fold is found in cytoskeletal polymers, chaperones, and various metabolic enzymes. Many actin-fold proteins, such as the carbohydrate kinases, do not polymerize. We found that Glk1, a Saccharomyces cerevisiae glucokinase, forms two-stranded filaments with ultrastructure that is distinct from that of cytoskeletal polymers. In cells, Glk1 polymerized upon sugar addition and depolymerized upon sugar withdrawal. Polymerization inhibits enzymatic activity; the Glk1 monomer-polymer equilibrium sets a maximum rate of glucose phosphorylation regardless of Glk1 concentration. A mutation that eliminated Glk1 polymerization alleviated concentration-dependent enzyme inhibition. Yeast containing nonpolymerizing Glk1 were less fit when growing on sugars and more likely to die when refed glucose. Glk1 polymerization arose independently from other actin-related filaments and may allow yeast to rapidly modulate glucokinase activity as nutrient availability changes.
Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2020        PMID: 32108112      PMCID: PMC7846450          DOI: 10.1126/science.aay5359

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  58 in total

1.  The high resolution crystal structure of yeast hexokinase PII with the correct primary sequence provides new insights into its mechanism of action.

Authors:  P R Kuser; S Krauchenco; O A Antunes; I Polikarpov
Journal:  J Biol Chem       Date:  2000-07-07       Impact factor: 5.157

2.  Persistence length of fascin-cross-linked actin filament bundles in solution and the in vitro motility assay.

Authors:  Hideyo Takatsuki; Elina Bengtsson; Alf Månsson
Journal:  Biochim Biophys Acta       Date:  2014-01-10

3.  Multiple mechanisms provide rapid and stringent glucose repression of GAL gene expression in Saccharomyces cerevisiae.

Authors:  M Johnston; J S Flick; T Pexton
Journal:  Mol Cell Biol       Date:  1994-06       Impact factor: 4.272

4.  Trehalose-6-phosphate, a new regulator of yeast glycolysis that inhibits hexokinases.

Authors:  M A Blázquez; R Lagunas; C Gancedo; J M Gancedo
Journal:  FEBS Lett       Date:  1993-08-23       Impact factor: 4.124

5.  SUMO fusions and SUMO-specific protease for efficient expression and purification of proteins.

Authors:  Michael P Malakhov; Michael R Mattern; Oxana A Malakhova; Mark Drinker; Stephen D Weeks; Tauseef R Butt
Journal:  J Struct Funct Genomics       Date:  2004

6.  High efficiency transformation of intact yeast cells using single stranded nucleic acids as a carrier.

Authors:  R H Schiestl; R D Gietz
Journal:  Curr Genet       Date:  1989-12       Impact factor: 3.886

7.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

8.  Large-scale filament formation inhibits the activity of CTP synthetase.

Authors:  Rachael M Barry; Anne-Florence Bitbol; Alexander Lorestani; Emeric J Charles; Chris H Habrian; Jesse M Hansen; Hsin-Jung Li; Enoch P Baldwin; Ned S Wingreen; Justin M Kollman; Zemer Gitai
Journal:  Elife       Date:  2014-07-16       Impact factor: 8.140

9.  The Pfam protein families database in 2019.

Authors:  Sara El-Gebali; Jaina Mistry; Alex Bateman; Sean R Eddy; Aurélien Luciani; Simon C Potter; Matloob Qureshi; Lorna J Richardson; Gustavo A Salazar; Alfredo Smart; Erik L L Sonnhammer; Layla Hirsh; Lisanna Paladin; Damiano Piovesan; Silvio C E Tosatto; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

Review 10.  Evolution of polymer formation within the actin superfamily.

Authors:  Patrick R Stoddard; Tom A Williams; Ethan Garner; Buzz Baum
Journal:  Mol Biol Cell       Date:  2017-09-15       Impact factor: 4.138

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  10 in total

1.  IMPDH1 retinal variants control filament architecture to tune allosteric regulation.

Authors:  Anika L Burrell; Chuankai Nie; Meerit Said; Jacqueline C Simonet; David Fernández-Justel; Matthew C Johnson; Joel Quispe; Rubén M Buey; Jeffrey R Peterson; Justin M Kollman
Journal:  Nat Struct Mol Biol       Date:  2022-01-10       Impact factor: 18.361

Review 2.  Compartmentalization and metabolic regulation of glycolysis.

Authors:  Gregory G Fuller; John K Kim
Journal:  J Cell Sci       Date:  2021-10-20       Impact factor: 5.235

Review 3.  Filament formation by metabolic enzymes-A new twist on regulation.

Authors:  Eric M Lynch; Justin M Kollman; Bradley A Webb
Journal:  Curr Opin Cell Biol       Date:  2020-05-14       Impact factor: 8.382

Review 4.  Reciprocal regulation of cellular mechanics and metabolism.

Authors:  Tom M J Evers; Liam J Holt; Simon Alberti; Alireza Mashaghi
Journal:  Nat Metab       Date:  2021-04-19

5.  Phosphofructokinase relocalizes into subcellular compartments with liquid-like properties in vivo.

Authors:  SoRi Jang; Zhao Xuan; Ross C Lagoy; Louise M Jawerth; Ian J Gonzalez; Milind Singh; Shavanie Prashad; Hee Soo Kim; Avinash Patel; Dirk R Albrecht; Anthony A Hyman; Daniel A Colón-Ramos
Journal:  Biophys J       Date:  2020-08-12       Impact factor: 4.033

6.  Cryo-EM structures of CTP synthase filaments reveal mechanism of pH-sensitive assembly during budding yeast starvation.

Authors:  Jesse M Hansen; Avital Horowitz; Eric M Lynch; Daniel P Farrell; Joel Quispe; Frank DiMaio; Justin M Kollman
Journal:  Elife       Date:  2021-11-04       Impact factor: 8.713

Review 7.  Condensate Formation by Metabolic Enzymes in Saccharomyces cerevisiae.

Authors:  Natsuko Miura
Journal:  Microorganisms       Date:  2022-01-21

8.  Mutant libraries reveal negative design shielding proteins from supramolecular self-assembly and relocalization in cells.

Authors:  Hector Garcia Seisdedos; Tal Levin; Gal Shapira; Saskia Freud; Emmanuel D Levy
Journal:  Proc Natl Acad Sci U S A       Date:  2022-02-01       Impact factor: 11.205

9.  Structural basis of dynamic P5CS filaments.

Authors:  Jiale Zhong; Chen-Jun Guo; Xian Zhou; Chia-Chun Chang; Boqi Yin; Tianyi Zhang; Huan-Huan Hu; Guang-Ming Lu; Ji-Long Liu
Journal:  Elife       Date:  2022-03-14       Impact factor: 8.713

10.  Freedom of assembly: metabolic enzymes come together.

Authors:  Jacqueline C Simonet; Anika L Burrell; Justin M Kollman; Jeffrey R Peterson
Journal:  Mol Biol Cell       Date:  2020-06-01       Impact factor: 4.138

  10 in total

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