Literature DB >> 32106033

Synthesis, vibrational spectra, DFT calculations, Hirshfeld surface analysis and molecular docking study of 3-chloro-3-methyl-2,6-diphenylpiperidin-4-one.

Arulraj R1, Sivakumar S2, Suresh S3, Anitha K4.   

Abstract

A newly synthesized molecular complex 3-chloro-3-methyl-2,6-diphenylpiperidin-4-one [CMDP] crystallizes in the triclinic space group P1. The piperidin-4-one ring exhibits a distorted chair conformation with the puckering parameters Q = 0.559 (3) Å, θ = 173.3 (3°) and φ = 180 (2°). The methyl substituent on the third position of the piperidine ring takes up a syn-periplanar positioning although the chloro substituent takes up an anti-clinical positioning with dihedral angle: Cl1-C2-C1-O1 = 113.3 (2°) due to the repulsion from an adjacent oxygen atom. The optimized molecular geometry and fundamental vibrational frequencies of the CMDP compounds are interpreted with the help of normal coordinate force field calculations based on DFT method B3LYP/6-31+G (d,p) level basis set. The HOMO-LUMO energy gap of the molecule is 5.4194 eV. The hardness value (η) of the CMDP molecule is 2.7097 eV. Hirshfeld surface analysis and fingerprint plots are supportive for determining the molecular shape and visually analyzing the intermolecular interactions in the crystal structure. The Hirshfeld surfaces like di,de,dnorm, shape index and curvedness of C18H18NOCl were pictured and discussed. The various levels of electronic transitions have been predicted by Time-Dependent Density Functional Theory (TD-DFT) calculations and compared with the recorded absorption spectrum. Molecular docking study was performed and reported for the synthesized compound against 4ey7 protein.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  B3LYP/6-31+G(d,p); DFT; Hirshfeld surface and fingerprint plots; Hydrogen bonds; Molecular docking study; Molecular orbitals; Piperidin-4-one

Year:  2020        PMID: 32106033     DOI: 10.1016/j.saa.2020.118166

Source DB:  PubMed          Journal:  Spectrochim Acta A Mol Biomol Spectrosc        ISSN: 1386-1425            Impact factor:   4.098


  3 in total

1.  Synthesis, crystal structure, DFT calculations and Hirshfeld surface analysis of 3-butyl-2,6-bis-(4-fluoro-phen-yl)piperidin-4-one.

Authors:  K Anitha; S Sivakumar; R Arulraj; K Rajkumar; Manpreet Kaur; Jerry P Jasinski
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2020-04-09

2.  3-Chloro-3-methyl-2,6-diarylpiperidin-4-ones as Anti-Cancer Agents: Synthesis, Biological Evaluation, Molecular Docking, and In Silico ADMET Prediction.

Authors:  Arulraj Ramalingam; Nurulhuda Mustafa; Wee Joo Chng; Mouna Medimagh; Sivakumar Sambandam; Noureddine Issaoui
Journal:  Biomolecules       Date:  2022-08-08

3.  Synthesis, spectroscopic, topological, hirshfeld surface analysis, and anti-covid-19 molecular docking investigation of isopropyl 1-benzoyl-4-(benzoyloxy)-2,6-diphenyl-1,2,5,6-tetrahydropyridine-3-carboxylate.

Authors:  Arulraj Ramalingam; Murugavel Kuppusamy; Sivakumar Sambandam; Mouna Medimagh; Oluwatoba Emmanuel Oyeneyin; Amirthaganesan Shanmugasundaram; Noureddine Issaoui; Nathanael Damilare Ojo
Journal:  Heliyon       Date:  2022-10-02
  3 in total

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