Literature DB >> 32095981

Toward an automatic tool for oligoclonal band detection in cerebrospinal fluid and tears for multiple sclerosis diagnosis: lane segmentation based on a ribbon univariate open active contour.

Farah Haddad1,2,3, Samuel Boudet4,5, Laurent Peyrodie4,6,7, Nicolas Vandenbroucke8, Patrick Hautecoeur5,9, Gérard Forzy5,9.   

Abstract

The latest revision of multiple sclerosis diagnosis guidelines emphasizes the role of oligoclonal band detection in isoelectric focusing images of cerebrospinal fluid. Recent studies suggest tears as a promising noninvasive alternative to cerebrospinal fluid. We are developing the first automatic method for isoelectric focusing image analysis and oligoclonal band detection in cerebrospinal fluid and tear samples. The automatic analysis would provide an accurate, fast analysis and would reduce the expert-dependent variability and errors of the current visual analysis. In this paper, we describe a new effective model for the fully automated segmentation of highly distorted lanes in isoelectric focusing images. This approach is a new formulation of the classic parametric active contour problem, in which an open active contour is constrained to move from the top to the bottom of the image, and the x-axis coordinate is expressed as a function of the y-axis coordinate. The left and right edges of the lane evolved together in a ribbon-like shape so that the full width of the lane was captured reliably. The segmentation algorithm was implemented using a multiresolution approach in which the scale factor and the active contour control points were progressively increased. The lane segmentation algorithm was tested on a database of 51 isoelectric focusing images containing 419 analyzable lanes. The new model gave robust results for highly curved lanes, weak edges, and low-contrast lanes. A total of 98.8% of the lanes were perfectly segmented, and the remaining 1.2% had only minor errors. The computation time (1 s per membrane) is negligible. This method precisely defines the region of interest in each lane and thus is a major step toward the first fully automatic tool for oligoclonal band detection in isoelectric focusing images. Graphical abstract.

Entities:  

Keywords:  Automatic lane segmentation; Electrophoresis; Multiple sclerosis; Open active contours

Mesh:

Substances:

Year:  2020        PMID: 32095981     DOI: 10.1007/s11517-020-02141-9

Source DB:  PubMed          Journal:  Med Biol Eng Comput        ISSN: 0140-0118            Impact factor:   2.602


  11 in total

1.  Interlaboratory reproducibility of isoelectric focusing in oligoclonal band detection.

Authors:  Diego Franciotta; Francesco Lolli
Journal:  Clin Chem       Date:  2007-08       Impact factor: 8.327

2.  An active contour model for segmenting and measuring retinal vessels.

Authors:  Bashir Al-Diri; Andrew Hunter; David Steel
Journal:  IEEE Trans Med Imaging       Date:  2009-03-24       Impact factor: 10.048

3.  Tear analysis in clinically isolated syndrome as new multiple sclerosis criterion.

Authors:  Gauthier Calais; Gerard Forzy; Charlotte Crinquette; Alexandre Mackowiak; Jerome de Seze; Frederic Blanc; Christine Lebrun; Olivier Heinzlef; Pierre Clavelou; Thibault Moreau; Bernadette Hennache; Helene Zephir; Albert Verier; Véronique Neuville; Christian Confavreux; Patrick Vermersch; Patrick Hautecoeur
Journal:  Mult Scler       Date:  2009-12-22       Impact factor: 6.312

4.  Tear analysis as a tool to detect oligoclonal bands in radiologically isolated syndrome.

Authors:  C Lebrun; G Forzy; N Collongues; M Cohen; J de Seze; P Hautecoeur
Journal:  Rev Neurol (Paris)       Date:  2015-01-19       Impact factor: 2.607

5.  Semi-automated image analysis of gel electrophoresis of cerebrospinal fluid for oligoclonal band detection.

Authors:  S Boudet; L Peyrodie; Z Wang; G Forzy
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2016-08

Review 6.  Diagnosis of multiple sclerosis: 2017 revisions of the McDonald criteria.

Authors:  Alan J Thompson; Brenda L Banwell; Frederik Barkhof; William M Carroll; Timothy Coetzee; Giancarlo Comi; Jorge Correale; Franz Fazekas; Massimo Filippi; Mark S Freedman; Kazuo Fujihara; Steven L Galetta; Hans Peter Hartung; Ludwig Kappos; Fred D Lublin; Ruth Ann Marrie; Aaron E Miller; David H Miller; Xavier Montalban; Ellen M Mowry; Per Soelberg Sorensen; Mar Tintoré; Anthony L Traboulsee; Maria Trojano; Bernard M J Uitdehaag; Sandra Vukusic; Emmanuelle Waubant; Brian G Weinshenker; Stephen C Reingold; Jeffrey A Cohen
Journal:  Lancet Neurol       Date:  2017-12-21       Impact factor: 44.182

7.  Recommended standard of cerebrospinal fluid analysis in the diagnosis of multiple sclerosis: a consensus statement.

Authors:  Mark S Freedman; Edward J Thompson; Florian Deisenhammer; Gavin Giovannoni; Guy Grimsley; Geoffrey Keir; Sten Ohman; Michael K Racke; Mohammad Sharief; Christian J M Sindic; Finn Sellebjerg; Wallace W Tourtellotte
Journal:  Arch Neurol       Date:  2005-06

8.  Epidemiology of multiple sclerosis.

Authors:  E Leray; T Moreau; A Fromont; G Edan
Journal:  Rev Neurol (Paris)       Date:  2015-12-21       Impact factor: 2.607

9.  Automatic DNA Diagnosis for 1D Gel Electrophoresis Images using Bio-image Processing Technique.

Authors:  Apichart Intarapanich; Saowaluck Kaewkamnerd; Philip J Shaw; Kittipat Ukosakit; Somvong Tragoonrung; Sissades Tongsima
Journal:  BMC Genomics       Date:  2015-12-09       Impact factor: 3.969

10.  Evaluation of semi-automatic image analysis tools for cerebrospinal fluid electrophoresis of IgG oligoclonal bands.

Authors:  G Forzy; L Peyrodie; S Boudet; Z Wang; A Vinclair; V Chieux
Journal:  Pract Lab Med       Date:  2017-11-10
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  1 in total

1.  Oligoclonal Band Straightening Based on Optimized Hierarchical Warping for Multiple Sclerosis Diagnosis.

Authors:  Farah Haddad; Samuel Boudet; Laurent Peyrodie; Nicolas Vandenbroucke; Julien Poupart; Patrick Hautecoeur; Vincent Chieux; Gérard Forzy
Journal:  Sensors (Basel)       Date:  2022-01-18       Impact factor: 3.576

  1 in total

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