Literature DB >> 32088562

Machine learning helps identifying volume-confounding effects in radiomics.

Alberto Traverso1, Michal Kazmierski2, Ivan Zhovannik3, Mattea Welch4, Leonard Wee2, David Jaffray5, Andre Dekker2, Andrew Hope5.   

Abstract

PURPOSE: Highlighting the risk of biases in radiomics-based models will help improve their quality and increase usage as decision support systems in the clinic. In this study we use machine learning-based methods to identify the presence of volume-confounding effects in radiomics features. Methods 841 radiomics features were extracted from two retrospective publicly available datasets of lung and head neck cancers using open source software. Unsupervised hierarchical clustering and principal component analysis (PCA) identified relations between radiomics and clinical outcomes (overall survival). Bootstrapping techniques with logistic regression verified features' prognostic power and robustness. Results Over 80% of the features had large pairwise correlations. Nearly 30% of the features presented strong correlations with tumor volume. Using volume-independent features for clustering and PCA did not allow risk stratification of patients. Clinical predictors outperformed radiomics features in bootstrapping and logistic regression. Conclusions The adoption of safeguards in radiomics is imperative to improve the quality of radiomics studies. We proposed machine learning (ML) - based methods for robust radiomics signatures development.
Copyright © 2020 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Head and neck; Lung; Machine learning; Predictions; Radiomics

Mesh:

Year:  2020        PMID: 32088562     DOI: 10.1016/j.ejmp.2020.02.010

Source DB:  PubMed          Journal:  Phys Med        ISSN: 1120-1797            Impact factor:   2.685


  10 in total

1.  Whole-tumor 3D volumetric MRI-based radiomics approach for distinguishing between benign and malignant soft tissue tumors.

Authors:  Brandon K K Fields; Natalie L Demirjian; Darryl H Hwang; Bino A Varghese; Steven Y Cen; Xiaomeng Lei; Bhushan Desai; Vinay Duddalwar; George R Matcuk
Journal:  Eur Radiol       Date:  2021-04-23       Impact factor: 5.315

2.  A deep survival interpretable radiomics model of hepatocellular carcinoma patients.

Authors:  Lise Wei; Dawn Owen; Benjamin Rosen; Xinzhou Guo; Kyle Cuneo; Theodore S Lawrence; Randall Ten Haken; Issam El Naqa
Journal:  Phys Med       Date:  2021-03-10       Impact factor: 2.685

3.  A machine learning-based prediction of the micropapillary/solid growth pattern in invasive lung adenocarcinoma with radiomics.

Authors:  Bingxi He; Yongxiang Song; Lili Wang; Tingting Wang; Yunlang She; Likun Hou; Lei Zhang; Chunyan Wu; Benson A Babu; Ulas Bagci; Tayab Waseem; Minglei Yang; Dong Xie; Chang Chen
Journal:  Transl Lung Cancer Res       Date:  2021-02

4.  Plausibility and redundancy analysis to select FDG-PET textural features in non-small cell lung cancer.

Authors:  Elisabeth Pfaehler; Liesbet Mesotten; Ivan Zhovannik; Simone Pieplenbosch; Michiel Thomeer; Karolien Vanhove; Peter Adriaensens; Ronald Boellaard
Journal:  Med Phys       Date:  2021-02-06       Impact factor: 4.071

5.  Cardiac Magnetic Resonance Radiomics Reveal Differential Impact of Sex, Age, and Vascular Risk Factors on Cardiac Structure and Myocardial Tissue.

Authors:  Zahra Raisi-Estabragh; Akshay Jaggi; Polyxeni Gkontra; Celeste McCracken; Nay Aung; Patricia B Munroe; Stefan Neubauer; Nicholas C Harvey; Karim Lekadir; Steffen E Petersen
Journal:  Front Cardiovasc Med       Date:  2021-12-22

6.  A Complex Radiomic Signature in Luminal Breast Cancer from a Weighted Statistical Framework: A Pilot Study.

Authors:  Rossana Castaldo; Nunzia Garbino; Carlo Cavaliere; Mariarosaria Incoronato; Luca Basso; Renato Cuocolo; Leonardo Pace; Marco Salvatore; Monica Franzese; Emanuele Nicolai
Journal:  Diagnostics (Basel)       Date:  2022-02-15

7.  Enhancing the stability of CT radiomics across different volume of interest sizes using parametric feature maps: a phantom study.

Authors:  Laura J Jensen; Damon Kim; Thomas Elgeti; Ingo G Steffen; Lars-Arne Schaafs; Bernd Hamm; Sebastian N Nagel
Journal:  Eur Radiol Exp       Date:  2022-09-15

8.  Radiation and immune checkpoint inhibitor-mediated pneumonitis risk stratification in patients with locally advanced non-small cell lung cancer: role of functional lung radiomics?

Authors:  Hannah M T Thomas; Daniel S Hippe; Parisa Forouzannezhad; Balu Krishna Sasidharan; Paul E Kinahan; Robert S Miyaoka; Hubert J Vesselle; Ramesh Rengan; Jing Zeng; Stephen R Bowen
Journal:  Discov Oncol       Date:  2022-09-01

Review 9.  Artificial Intelligence Applications to Improve the Treatment of Locally Advanced Non-Small Cell Lung Cancers.

Authors:  Andrew Hope; Maikel Verduin; Thomas J Dilling; Ananya Choudhury; Rianne Fijten; Leonard Wee; Hugo Jwl Aerts; Issam El Naqa; Ross Mitchell; Marc Vooijs; Andre Dekker; Dirk de Ruysscher; Alberto Traverso
Journal:  Cancers (Basel)       Date:  2021-05-14       Impact factor: 6.639

10.  Stability of Liver Radiomics across Different 3D ROI Sizes-An MRI In Vivo Study.

Authors:  Laura J Jensen; Damon Kim; Thomas Elgeti; Ingo G Steffen; Bernd Hamm; Sebastian N Nagel
Journal:  Tomography       Date:  2021-12-03
  10 in total

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