Literature DB >> 3207718

13C NMR of the bases of three DNA oligonucleotide duplexes: assignment methods and structural features.

S R LaPlante1, E A Boudreau, N Zanatta, G C Levy, P N Borer, J Ashcroft, D Cowburn.   

Abstract

Natural abundance 13C NMR spectra of three DNA oligomers have been obtained. Most of the base resonances are well resolved from one another. A combination of two independent methods was used in making assignments: a one-dimensional spectral comparison method and a two-dimensional proton-detected 1H-13C correlated experiment for the protonated carbons. There are large shielding changes (between 1.62 and -1.40 ppm) upon thermal dissociation of the duplex. The shapes of the chemical shift vs temperature curves are largely independent of sequence. The base carbon resonance frequencies are sensitive to hydrogen bonding, base stacking, sugar conformation, and changes in the glycosyl torsion angle.

Entities:  

Mesh:

Substances:

Year:  1988        PMID: 3207718     DOI: 10.1021/bi00420a048

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  6 in total

1.  Heteronuclear NMR of DNA with the heteronucleus in natural abundance: facilitated assignment and extraction of coupling constants.

Authors:  P Schmieder; J H Ippel; H van den Elst; G A van der Marel; J H van Boom; C Altona; H Kessler
Journal:  Nucleic Acids Res       Date:  1992-09-25       Impact factor: 16.971

2.  Nucleotide-type chemical shift assignment of the encapsulated 40 kbp dsDNA in intact bacteriophage T7 by MAS solid-state NMR.

Authors:  Gili Abramov; Amir Goldbourt
Journal:  J Biomol NMR       Date:  2014-05-30       Impact factor: 2.835

3.  Through-bond correlation of adenine H2 and H8 protons in unlabeled DNA fragments by HMBC spectroscopy.

Authors:  M J van Dongen; S S Wijmenga; R Eritja; F Azorín; C W Hilbers
Journal:  J Biomol NMR       Date:  1996-09       Impact factor: 2.835

4.  Influence of the glycosidic torsion angle on 13C and 15N shifts in guanosine nucleotides: investigations of G-tetrad models with alternating syn and anti bases.

Authors:  K L Greene; Y Wang; D Live
Journal:  J Biomol NMR       Date:  1995-06       Impact factor: 2.835

5.  Detection of nucleic acids and other low abundance components in native bone and osteosarcoma extracellular matrix by isotope enrichment and DNP-enhanced NMR.

Authors:  Ieva Goldberga; Rui Li; Wing Ying Chow; David G Reid; Ulyana Bashtanova; Rakesh Rajan; Anna Puszkarska; Hartmut Oschkinat; Melinda J Duer
Journal:  RSC Adv       Date:  2019-08-27       Impact factor: 4.036

6.  Microscopic structure of the polymer-induced liquid precursor for calcium carbonate.

Authors:  Yifei Xu; Koen C H Tijssen; Paul H H Bomans; Anat Akiva; Heiner Friedrich; Arno P M Kentgens; Nico A J M Sommerdijk
Journal:  Nat Commun       Date:  2018-07-03       Impact factor: 14.919

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.