Literature DB >> 32066085

Development of imaging scaffolds for cryo-electron microscopy.

Todd O Yeates1, Matthew P Agdanowski2, Yuxi Liu3.   

Abstract

Following recent hardware and software developments, single particle cryo-electron microscopy (cryo-EM) has become one of the most popular structural biology tools. Many targets, such as viruses, large protein complexes and oligomeric membrane proteins, have been resolved to atomic resolution using single-particle cryo-EM, which relies on the accurate assignment of particle location and orientation from intrinsically noisy projection images. The same image processing procedures are more challenging for smaller proteins due to their lower signal-to-noise ratios. Consequently, though most cellular proteins are less than 50kDa, so far it has been possible to solve cryo-EM structures near that size range for only a few favorable cases. Here we highlight some of the challenges and recent efforts to break through this lower size limit by engineering large scaffolds to rigidly display multiple small proteins for imaging. Future design efforts are noted.
Copyright © 2020 Elsevier Ltd. All rights reserved.

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Year:  2020        PMID: 32066085      PMCID: PMC7117969          DOI: 10.1016/j.sbi.2020.01.012

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  64 in total

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Journal:  Protein Sci       Date:  2009-05       Impact factor: 6.725

3.  Breaking Cryo-EM Resolution Barriers to Facilitate Drug Discovery.

Authors:  Alan Merk; Alberto Bartesaghi; Soojay Banerjee; Veronica Falconieri; Prashant Rao; Mindy I Davis; Rajan Pragani; Matthew B Boxer; Lesley A Earl; Jacqueline L S Milne; Sriram Subramaniam
Journal:  Cell       Date:  2016-05-26       Impact factor: 41.582

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Authors:  Richard McGonigle; Wei Boon Yap; Swee Tin Ong; Derek Gatherer; Saskia E Bakker; Wen Siang Tan; David Bhella
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Journal:  Nat Commun       Date:  2016-03-16       Impact factor: 14.919

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Authors:  Sandrine Guillard; Paulina Kolasinska-Zwierz; Judit Debreczeni; Jason Breed; Jing Zhang; Nicolas Bery; Rose Marwood; Jon Tart; Ross Overman; Pawel Stocki; Bina Mistry; Christopher Phillips; Terence Rabbitts; Ronald Jackson; Ralph Minter
Journal:  Nat Commun       Date:  2017-07-14       Impact factor: 14.919

Review 7.  Approaches to altering particle distributions in cryo-electron microscopy sample preparation.

Authors:  Ieva Drulyte; Rachel M Johnson; Emma L Hesketh; Daniel L Hurdiss; Charlotte A Scarff; Sebastian A Porav; Neil A Ranson; Stephen P Muench; Rebecca F Thompson
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-05-18       Impact factor: 7.652

8.  Single particle cryo-EM reconstruction of 52 kDa streptavidin at 3.2 Angstrom resolution.

Authors:  Xiao Fan; Jia Wang; Xing Zhang; Zi Yang; Jin-Can Zhang; Lingyun Zhao; Hai-Lin Peng; Jianlin Lei; Hong-Wei Wang
Journal:  Nat Commun       Date:  2019-06-03       Impact factor: 14.919

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Journal:  Nat Commun       Date:  2019-07-18       Impact factor: 14.919

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  4 in total

1.  Developments and Ongoing Challenges for Analysis of Surface-Bound Proteins.

Authors:  Tobias Weidner; David G Castner
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2021-07-27       Impact factor: 12.400

2.  N-terminal Transmembrane-Helix Epitope Tag for X-ray Crystallography and Electron Microscopy of Small Membrane Proteins.

Authors:  Benjamin C McIlwain; Amanda L Erwin; Alexander R Davis; B Ben Koff; Louise Chang; Tatsiana Bylund; Gwo-Yu Chuang; Peter D Kwong; Melanie D Ohi; Yen-Ting Lai; Randy B Stockbridge
Journal:  J Mol Biol       Date:  2021-03-05       Impact factor: 6.151

3.  Megabodies expand the nanobody toolkit for protein structure determination by single-particle cryo-EM.

Authors:  Tomasz Uchański; Simonas Masiulis; Baptiste Fischer; Valentina Kalichuk; Uriel López-Sánchez; Eleftherios Zarkadas; Miriam Weckener; Andrija Sente; Philip Ward; Alexandre Wohlkönig; Thomas Zögg; Han Remaut; James H Naismith; Hugues Nury; Wim Vranken; A Radu Aricescu; Els Pardon; Jan Steyaert
Journal:  Nat Methods       Date:  2021-01-06       Impact factor: 47.990

Review 4.  Putting on molecular weight: Enabling cryo-EM structure determination of sub-100-kDa proteins.

Authors:  Koen Wentinck; Christos Gogou; Dimphna H Meijer
Journal:  Curr Res Struct Biol       Date:  2022-10-02
  4 in total

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