Literature DB >> 32060814

Enteric Virome and Carcinogenesis in the Gut.

Cade Emlet1, Mack Ruffin1, Regina Lamendella2.   

Abstract

Colorectal cancer (CRC) is a leading cause of cancer-related deaths in both the USA and the world. Recent research has demonstrated the involvement of the gut microbiota in CRC development and progression. Microbial biomarkers of disease have focused primarily on the bacterial component of the microbiome; however, the viral portion of the microbiome, consisting of both bacteriophages and eukaryotic viruses, together known as the virome, has been lesser studied. Here we review the recent advancements in high-throughput sequencing (HTS) technologies and bioinformatics, which have enabled scientists to better understand how viruses might influence the development of colorectal cancer. We discuss the contemporary findings revealing modulations in the virome and their correlation with CRC development and progression. While a variety of challenges still face viral HTS detection in clinical specimens, we consider herein numerous next steps for future basic and clinical research. Clinicians need to move away from a single infectious agent model for disease etiology by grasping new, more encompassing etiological paradigms, in which communities of various microbial components interact with each other and the host. The reporting and indexing of patient health information, socioeconomic data, and other relevant metadata will enable identification of predictive variables and covariates of viral presence and CRC development. Altogether, the virome has a more profound role in carcinogenesis and cancer progression than once thought, and viruses, specific for either human cells or bacteria, are clinically relevant in understanding CRC pathology, patient prognosis, and treatment development.

Entities:  

Keywords:  Bioinformatics; Carcinogenesis; Colorectal cancer; Microbiome; Sequencing; Virome

Mesh:

Year:  2020        PMID: 32060814     DOI: 10.1007/s10620-020-06126-4

Source DB:  PubMed          Journal:  Dig Dis Sci        ISSN: 0163-2116            Impact factor:   3.199


  137 in total

1.  Rapid identification of non-human sequences in high-throughput sequencing datasets.

Authors:  Aparna Bhaduri; Kun Qu; Carolyn S Lee; Alexander Ungewickell; Paul A Khavari
Journal:  Bioinformatics       Date:  2012-02-28       Impact factor: 6.937

2.  Evaluating techniques for metagenome annotation using simulated sequence data.

Authors:  Richard J Randle-Boggis; Thorunn Helgason; Melanie Sapp; Peter D Ashton
Journal:  FEMS Microbiol Ecol       Date:  2016-05-08       Impact factor: 4.194

3.  Global burden of cancers attributable to infections in 2012: a synthetic analysis.

Authors:  Martyn Plummer; Catherine de Martel; Jerome Vignat; Jacques Ferlay; Freddie Bray; Silvia Franceschi
Journal:  Lancet Glob Health       Date:  2016-07-25       Impact factor: 26.763

4.  Colorectal papillomavirus infection in patients with colorectal cancer.

Authors:  Sohrab Bodaghi; Koji Yamanegi; Shu-Yuan Xiao; Maria Da Costa; Joel M Palefsky; Zhi-Ming Zheng
Journal:  Clin Cancer Res       Date:  2005-04-15       Impact factor: 12.531

Review 5.  Human papillomavirus types in head and neck squamous cell carcinomas worldwide: a systematic review.

Authors:  Aimee R Kreimer; Gary M Clifford; Peter Boyle; Silvia Franceschi
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2005-02       Impact factor: 4.254

Review 6.  Emergent human pathogen simian virus 40 and its role in cancer.

Authors:  Regis A Vilchez; Janet S Butel
Journal:  Clin Microbiol Rev       Date:  2004-07       Impact factor: 26.132

7.  Filamentous Bacteriophage Promote Biofilm Assembly and Function.

Authors:  Patrick R Secor; Johanna M Sweere; Lia A Michaels; Andrey V Malkovskiy; Daniel Lazzareschi; Ethan Katznelson; Jayakumar Rajadas; Michael E Birnbaum; Allison Arrigoni; Kathleen R Braun; Stephen P Evanko; David A Stevens; Werner Kaminsky; Pradeep K Singh; William C Parks; Paul L Bollyky
Journal:  Cell Host Microbe       Date:  2015-11-11       Impact factor: 21.023

8.  DNA from fecal immunochemical test can replace stool for detection of colonic lesions using a microbiota-based model.

Authors:  Nielson T Baxter; Charles C Koumpouras; Mary A M Rogers; Mack T Ruffin; Patrick D Schloss
Journal:  Microbiome       Date:  2016-11-14       Impact factor: 14.650

9.  High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach.

Authors:  Sarah Mollerup; Maria Asplund; Jens Friis-Nielsen; Kristín Rós Kjartansdóttir; Helena Fridholm; Thomas Arn Hansen; José Alejandro Romero Herrera; Christopher James Barnes; Randi Holm Jensen; Stine Raith Richter; Ida Broman Nielsen; Carlotta Pietroni; David E Alquezar-Planas; Alba Rey-Iglesia; Pernille V S Olsen; Ewa Rajpert-De Meyts; Line Groth-Pedersen; Christian von Buchwald; David H Jensen; Robert Gniadecki; Estrid Høgdall; Jill Levin Langhoff; Imre Pete; Ildikó Vereczkey; Zsolt Baranyai; Karen Dybkaer; Hans Erik Johnsen; Torben Steiniche; Peter Hokland; Jacob Rosenberg; Ulrik Baandrup; Thomas Sicheritz-Pontén; Eske Willerslev; Søren Brunak; Ole Lund; Tobias Mourier; Lasse Vinner; Jose M G Izarzugaza; Lars Peter Nielsen; Anders Johannes Hansen
Journal:  J Infect Dis       Date:  2019-09-13       Impact factor: 5.226

10.  An evaluation of the accuracy and speed of metagenome analysis tools.

Authors:  Stinus Lindgreen; Karen L Adair; Paul P Gardner
Journal:  Sci Rep       Date:  2016-01-18       Impact factor: 4.379

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  14 in total

Review 1.  Gut microbiota: Role and Association with Tumorigenesis in Different Malignancies.

Authors:  Altamas Ali; Anam Ara; Manoj Kumar Kashyap
Journal:  Mol Biol Rep       Date:  2022-05-11       Impact factor: 2.742

Review 2.  The Microbiome: the Link to Colorectal Cancer and Research Opportunities.

Authors:  Samuel H Cass; Nadim J Ajami; Michael G White
Journal:  Curr Treat Options Oncol       Date:  2022-03-07

3.  The ecogenomics of dsDNA bacteriophages in feces of stabled and feral horses.

Authors:  V V Babenko; A Millard; E E Kulikov; N N Spasskaya; M A Letarova; D N Konanov; I S Belalov; A V Letarov
Journal:  Comput Struct Biotechnol J       Date:  2020-11-10       Impact factor: 7.271

4.  The Viral Janus: Viruses as Aetiological Agents and Treatment Options in Colorectal Cancer.

Authors:  Christopher J R Turkington; Ambarish C Varadan; Shea F Grenier; Juris A Grasis
Journal:  Front Cell Infect Microbiol       Date:  2021-01-07       Impact factor: 5.293

5.  The dark side of the gut: Virome-host interactions in intestinal homeostasis and disease.

Authors:  Yuhao Li; Scott A Handley; Megan T Baldridge
Journal:  J Exp Med       Date:  2021-05-03       Impact factor: 14.307

Review 6.  Updating changes in human gut microbial communities associated with Clostridioides difficile infection.

Authors:  Giovanny Herrera; Daniel Paredes-Sabja; Manuel Alfonso Patarroyo; Juan David Ramírez; Marina Muñoz
Journal:  Gut Microbes       Date:  2021 Jan-Dec

Review 7.  The Human Virome: Viral Metagenomics, Relations with Human Diseases, and Therapeutic Applications.

Authors:  Geng-Hao Bai; Sheng-Chieh Lin; Yi-Hsiang Hsu; Shih-Yen Chen
Journal:  Viruses       Date:  2022-01-28       Impact factor: 5.048

Review 8.  The Macrophages-Microbiota Interplay in Colorectal Cancer (CRC)-Related Inflammation: Prognostic and Therapeutic Significance.

Authors:  Silvia Mola; Chiara Pandolfo; Antonio Sica; Chiara Porta
Journal:  Int J Mol Sci       Date:  2020-09-18       Impact factor: 5.923

Review 9.  The Roles of the Virome in Cancer.

Authors:  Felix Broecker; Karin Moelling
Journal:  Microorganisms       Date:  2021-12-08

Review 10.  Bacterial-Viral Interactions in Human Orodigestive and Female Genital Tract Cancers: A Summary of Epidemiologic and Laboratory Evidence.

Authors:  Ikuko Kato; Jilei Zhang; Jun Sun
Journal:  Cancers (Basel)       Date:  2022-01-15       Impact factor: 6.639

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