Literature DB >> 32060026

Proteomic Characterization of Lignocellulolytic Enzymes Secreted by the Insect-Associated Fungus Daldinia decipiens oita, Isolated from a Forest in Northern Japan.

Chiaki Hori1,2, Ruopu Song3, Kazuki Matsumoto4,5, Ruy Matsumoto6, Benjamin B Minkoff7, Shuzo Oita4, Hideho Hara8, Taichi E Takasuka1,9,5.   

Abstract

Wood-devastating insects utilize their symbiotic microbes with lignocellulose-degrading abilities to extract energy from recalcitrant woods. It is well known that free-living lignocellulose-degrading fungi secrete various carbohydrate-active enzymes (CAZymes) to degrade plant cell wall components, mainly cellulose, hemicellulose, and lignin. However, CAZymes from insect-symbiotic fungi have not been well documented except for a few examples. In this study, an insect-associated fungus, Daldinia decipiens oita, was isolated as a potential symbiotic fungus of female Xiphydria albopicta captured from Hokkaido forest. This fungus was grown in seven different media containing a single carbon source, glucose, cellulose, xylan, mannan, pectin, poplar, or larch, and the secreted proteins were identified by liquid chromatography-tandem mass spectrometry (LC-MS/MS). A total of 128 CAZymes, including domains of 92 glycoside hydrolases, 15 carbohydrate esterases, 5 polysaccharide lyases, 17 auxiliary activities, and 11 carbohydrate-binding modules, were identified, and these are involved in degradation of cellulose and hemicellulose but not lignin. Together with the results of polysaccharide-degrading activity measurements, we concluded that D. decipiens oita tightly regulates the expression of these CAZymes in response to the tested plant cell wall materials. Overall, this study described the detailed proteomic approach of a woodwasp-associated fungus and revealed that the new isolate, D. decipiens oita, secretes diverse CAZymes to efficiently degrade lignocellulose in the symbiotic environment.IMPORTANCE Recent studies show the potential impacts of insect symbiont microbes on biofuel application with regard to their degradation capability of a recalcitrant plant cell wall. In this study, we describe a novel fungal isolate, D. decipiens oita, as a single symbiotic fungus from the Xiphydria woodwasp found in the northern forests of Japan. Our detailed secretome analyses of D. decipiens oita, together with activity measurements, reveal that this insect-associated fungus exhibits high and broad activities for plant cell wall material degradation, suggesting potential applications within the biomass conversion industry for plant mass degradation.
Copyright © 2020 American Society for Microbiology.

Entities:  

Keywords:  cellulolytic fungus; cellulose; glycoside hydrolases; hemicellulose; proteomics

Year:  2020        PMID: 32060026      PMCID: PMC7117920          DOI: 10.1128/AEM.02350-19

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  44 in total

1.  The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.

Authors:  Dimitrios Floudas; Manfred Binder; Robert Riley; Kerrie Barry; Robert A Blanchette; Bernard Henrissat; Angel T Martínez; Robert Otillar; Joseph W Spatafora; Jagjit S Yadav; Andrea Aerts; Isabelle Benoit; Alex Boyd; Alexis Carlson; Alex Copeland; Pedro M Coutinho; Ronald P de Vries; Patricia Ferreira; Keisha Findley; Brian Foster; Jill Gaskell; Dylan Glotzer; Paweł Górecki; Joseph Heitman; Cedar Hesse; Chiaki Hori; Kiyohiko Igarashi; Joel A Jurgens; Nathan Kallen; Phil Kersten; Annegret Kohler; Ursula Kües; T K Arun Kumar; Alan Kuo; Kurt LaButti; Luis F Larrondo; Erika Lindquist; Albee Ling; Vincent Lombard; Susan Lucas; Taina Lundell; Rachael Martin; David J McLaughlin; Ingo Morgenstern; Emanuelle Morin; Claude Murat; Laszlo G Nagy; Matt Nolan; Robin A Ohm; Aleksandrina Patyshakuliyeva; Antonis Rokas; Francisco J Ruiz-Dueñas; Grzegorz Sabat; Asaf Salamov; Masahiro Samejima; Jeremy Schmutz; Jason C Slot; Franz St John; Jan Stenlid; Hui Sun; Sheng Sun; Khajamohiddin Syed; Adrian Tsang; Ad Wiebenga; Darcy Young; Antonio Pisabarro; Daniel C Eastwood; Francis Martin; Dan Cullen; Igor V Grigoriev; David S Hibbett
Journal:  Science       Date:  2012-06-29       Impact factor: 47.728

2.  Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein.

Authors:  Yasushi Ishihama; Yoshiya Oda; Tsuyoshi Tabata; Toshitaka Sato; Takeshi Nagasu; Juri Rappsilber; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2005-06-14       Impact factor: 5.911

Review 3.  Towards enzymatic breakdown of complex plant xylan structures: State of the art.

Authors:  Peter Biely; Suren Singh; Vladimír Puchart
Journal:  Biotechnol Adv       Date:  2016-09-09       Impact factor: 14.227

Review 4.  Evolution and Ecology of Actinobacteria and Their Bioenergy Applications.

Authors:  Gina R Lewin; Camila Carlos; Marc G Chevrette; Heidi A Horn; Bradon R McDonald; Robert J Stankey; Brian G Fox; Cameron R Currie
Journal:  Annu Rev Microbiol       Date:  2016-09-08       Impact factor: 15.500

5.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

6.  Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens.

Authors:  Frank O Aylward; Kristin E Burnum-Johnson; Susannah G Tringe; Clotilde Teiling; Daniel M Tremmel; Joseph A Moeller; Jarrod J Scott; Kerrie W Barry; Paul D Piehowski; Carrie D Nicora; Stephanie A Malfatti; Matthew E Monroe; Samuel O Purvine; Lynne A Goodwin; Richard D Smith; George M Weinstock; Nicole M Gerardo; Garret Suen; Mary S Lipton; Cameron R Currie
Journal:  Appl Environ Microbiol       Date:  2013-04-12       Impact factor: 4.792

7.  Convergent bacterial microbiotas in the fungal agricultural systems of insects.

Authors:  Frank O Aylward; Garret Suen; Peter H W Biedermann; Aaron S Adams; Jarrod J Scott; Stephanie A Malfatti; Tijana Glavina del Rio; Susannah G Tringe; Michael Poulsen; Kenneth F Raffa; Kier D Klepzig; Cameron R Currie
Journal:  mBio       Date:  2014-11-18       Impact factor: 7.867

8.  Aerobic deconstruction of cellulosic biomass by an insect-associated Streptomyces.

Authors:  Taichi E Takasuka; Adam J Book; Gina R Lewin; Cameron R Currie; Brian G Fox
Journal:  Sci Rep       Date:  2013-01-07       Impact factor: 4.379

9.  Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.

Authors:  Christian P Kubicek; Alfredo Herrera-Estrella; Verena Seidl-Seiboth; Diego A Martinez; Irina S Druzhinina; Michael Thon; Susanne Zeilinger; Sergio Casas-Flores; Benjamin A Horwitz; Prasun K Mukherjee; Mala Mukherjee; László Kredics; Luis D Alcaraz; Andrea Aerts; Zsuzsanna Antal; Lea Atanasova; Mayte G Cervantes-Badillo; Jean Challacombe; Olga Chertkov; Kevin McCluskey; Fanny Coulpier; Nandan Deshpande; Hans von Döhren; Daniel J Ebbole; Edgardo U Esquivel-Naranjo; Erzsébet Fekete; Michel Flipphi; Fabian Glaser; Elida Y Gómez-Rodríguez; Sabine Gruber; Cliff Han; Bernard Henrissat; Rosa Hermosa; Miguel Hernández-Oñate; Levente Karaffa; Idit Kosti; Stéphane Le Crom; Erika Lindquist; Susan Lucas; Mette Lübeck; Peter S Lübeck; Antoine Margeot; Benjamin Metz; Monica Misra; Helena Nevalainen; Markus Omann; Nicolle Packer; Giancarlo Perrone; Edith E Uresti-Rivera; Asaf Salamov; Monika Schmoll; Bernhard Seiboth; Harris Shapiro; Serenella Sukno; Juan Antonio Tamayo-Ramos; Doris Tisch; Aric Wiest; Heather H Wilkinson; Michael Zhang; Pedro M Coutinho; Charles M Kenerley; Enrique Monte; Scott E Baker; Igor V Grigoriev
Journal:  Genome Biol       Date:  2011-04-18       Impact factor: 13.583

10.  Genome analysis of Daldinia eschscholtzii strains UM 1400 and UM 1020, wood-decaying fungi isolated from human hosts.

Authors:  Chai Ling Chan; Su Mei Yew; Yun Fong Ngeow; Shiang Ling Na; Kok Wei Lee; Chee-Choong Hoh; Wai-Yan Yee; Kee Peng Ng
Journal:  BMC Genomics       Date:  2015-11-18       Impact factor: 3.969

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  5 in total

1.  Lessons From Insect Fungiculture: From Microbial Ecology to Plastics Degradation.

Authors:  Mariana O Barcoto; Andre Rodrigues
Journal:  Front Microbiol       Date:  2022-05-24       Impact factor: 6.064

2.  Thermophilic Geobacillus WSUCF1 Secretome for Saccharification of Ammonia Fiber Expansion and Extractive Ammonia Pretreated Corn Stover.

Authors:  Aditya Bhalla; Jessie Arce; Bryan Ubanwa; Gursharan Singh; Rajesh K Sani; Venkatesh Balan
Journal:  Front Microbiol       Date:  2022-05-25       Impact factor: 6.064

3.  Mannose- and Mannobiose-Specific Responses of the Insect-Associated Cellulolytic Bacterium Streptomyces sp. Strain SirexAA-E.

Authors:  Keisuke Ohashi; Shogo Hataya; Akane Nakata; Kazuki Matsumoto; Natsumi Kato; Wakana Sato; Camila Carlos-Shanley; Emily T Beebe; Cameron R Currie; Brian G Fox; Taichi E Takasuka
Journal:  Appl Environ Microbiol       Date:  2021-06-25       Impact factor: 4.792

4.  Reconstitution of Drosophila and human chromatins by wheat germ cell-free co-expression system.

Authors:  Kei-Ichi Okimune; Szilvia K Nagy; Shogo Hataya; Yaeta Endo; Taichi E Takasuka
Journal:  BMC Biotechnol       Date:  2020-12-01       Impact factor: 2.563

5.  The Role of Feeding Characteristics in Shaping Gut Microbiota Composition and Function of Ensifera (Orthoptera).

Authors:  Xiang Zheng; Qidi Zhu; Meng Qin; Zhijun Zhou; Chunmao Liu; Liyuan Wang; Fuming Shi
Journal:  Insects       Date:  2022-08-10       Impact factor: 3.139

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