Literature DB >> 32056783

A review of omics approaches to study preeclampsia.

Paula A Benny1, Fadhl M Alakwaa2, Ryan J Schlueter3, Cameron B Lassiter1, Lana X Garmire4.   

Abstract

Preeclampsia is a medical condition affecting 5-10% of pregnancies. It has serious effects on the health of the pregnant mother and developing fetus. While possible causes of preeclampsia are speculated, there is no consensus on its etiology. The advancement of big data and high-throughput technologies enables to study preeclampsia at the new and systematic level. In this review, we first highlight the recent progress made in the field of preeclampsia research using various omics technology platforms, including epigenetics, genome-wide association studies (GWAS), transcriptomics, proteomics and metabolomics. Next, we integrate the results in individual omic level studies, and show that despite the lack of coherent biomarkers in all omics studies, inhibin is a potential preeclamptic biomarker supported by GWAS, transcriptomics and DNA methylation evidence. Using network analysis on the biomarkers of all the literature reviewed here, we identify four striking sub-networks with clear biological functions supported by previous molecular-biology and clinical observations. In summary, omics integration approach offers the promise to understand molecular mechanisms in preeclampsia.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Big data; Biomarker; Epigenetics; Integration; Metabolomics; Multi-omics; Network; Omics; Pathway; Preeclampsia; Proteomics; Transcriptomics

Mesh:

Substances:

Year:  2020        PMID: 32056783      PMCID: PMC7306500          DOI: 10.1016/j.placenta.2020.01.008

Source DB:  PubMed          Journal:  Placenta        ISSN: 0143-4004            Impact factor:   3.481


  100 in total

1.  Metabolomics and first-trimester prediction of early-onset preeclampsia.

Authors:  Ray O Bahado-Singh; Ranjit Akolekar; Rupasri Mandal; Edison Dong; Jianguo Xia; Michael Kruger; David S Wishart; Kypros Nicolaides
Journal:  J Matern Fetal Neonatal Med       Date:  2012-04-28

2.  Clinical application of SNP array analysis in first-trimester pregnancy loss: a prospective study.

Authors:  Y Wang; Q Cheng; L Meng; C Luo; H Hu; J Zhang; J Cheng; T Xu; T Jiang; D Liang; P Hu; Z Xu
Journal:  Clin Genet       Date:  2016-12-22       Impact factor: 4.438

3.  Screening of serum biomarkers of preeclampsia by proteomics combination with bioinformatics.

Authors:  Yuee Ling; Jie Su; Jie Lin; Sumei Wang
Journal:  Hypertens Pregnancy       Date:  2019-07-08       Impact factor: 2.108

4.  Synthesis of complement proteins in the human chorion is differentially regulated by cytokines.

Authors:  M Goldberg; N Luknar-Gabor; R Keidar; Y Katz
Journal:  Mol Immunol       Date:  2006-09-26       Impact factor: 4.407

5.  Measurement of serum concentrations of inhibin-A (alpha-beta A dimer) during human pregnancy.

Authors:  S Muttukrishna; L George; P A Fowler; N P Groome; P G Knight
Journal:  Clin Endocrinol (Oxf)       Date:  1995-04       Impact factor: 3.478

Review 6.  Epigenetics: definition, mechanisms and clinical perspective.

Authors:  Cathérine Dupont; D Randall Armant; Carol A Brenner
Journal:  Semin Reprod Med       Date:  2009-08-26       Impact factor: 1.303

7.  Elevated levels of protein AMBP in cerebrospinal fluid of women with preeclampsia compared to normotensive pregnant women.

Authors:  Caroline B van den Berg; Johannes J Duvekot; Coşkun Güzel; Stefan R Hansson; Thomas G de Leeuw; Eric A P Steegers; Johannes Versendaal; Theo M Luider; Marcel P Stoop
Journal:  Proteomics Clin Appl       Date:  2016-10-24       Impact factor: 3.494

8.  First-Trimester Serum Acylcarnitine Levels to Predict Preeclampsia: A Metabolomics Approach.

Authors:  Maria P H Koster; Rob J Vreeken; Amy C Harms; Adrie D Dane; Sylwia Kuc; Peter C J I Schielen; Thomas Hankemeier; Ruud Berger; Gerard H A Visser; Jeroen L A Pennings
Journal:  Dis Markers       Date:  2015-06-04       Impact factor: 3.434

9.  Tubulointerstitial nephritis antigen-like 1 protein is downregulated in the placenta of pre-eclamptic women.

Authors:  Sheon Mary; Mahesh J Kulkarni; Savita S Mehendale; Sadhana R Joshi; Ashok P Giri
Journal:  Clin Proteomics       Date:  2017-03-21       Impact factor: 3.988

10.  Differential methylation of genes associated with cell adhesion in preeclamptic placentas.

Authors:  Lauren Anton; Amy G Brown; Marisa S Bartolomei; Michal A Elovitz
Journal:  PLoS One       Date:  2014-06-25       Impact factor: 3.240

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  14 in total

1.  Identifying preeclampsia-associated genes using a control theory method.

Authors:  Xiaomei Li; Lin Liu; Clare Whitehead; Jiuyong Li; Benjamin Thierry; Thuc D Le; Marnie Winter
Journal:  Brief Funct Genomics       Date:  2022-07-27       Impact factor: 4.840

Review 2.  Secretory products of the corpus luteum and preeclampsia.

Authors:  María M Pereira; Monica Mainigi; Jerome F Strauss
Journal:  Hum Reprod Update       Date:  2021-06-22       Impact factor: 15.610

3.  Placental Microarray Profiling Reveals Common mRNA and lncRNA Expression Patterns in Preeclampsia and Intrauterine Growth Restriction.

Authors:  Diana Medina-Bastidas; Mario Guzmán-Huerta; Hector Borboa-Olivares; César Ruiz-Cruz; Sandra Parra-Hernández; Arturo Flores-Pliego; Ivan Salido-Guadarrama; Lisbeth Camargo-Marín; Eliakym Arambula-Meraz; Guadalupe Estrada-Gutierrez
Journal:  Int J Mol Sci       Date:  2020-05-20       Impact factor: 5.923

Review 4.  Quantitative proteomics-based analyses performed on pre-eclampsia samples in the 2004-2020 period: a systematic review.

Authors:  Rosana Navajas; Fernando Corrales; Alberto Paradela
Journal:  Clin Proteomics       Date:  2021-01-26       Impact factor: 3.988

5.  Urothelial Cancer Associated 1 (UCA1) and miR-193 Are Two Non-coding RNAs Involved in Trophoblast Fusion and Placental Diseases.

Authors:  Clara Apicella; Camino S M Ruano; Sébastien Jacques; Géraldine Gascoin; Céline Méhats; Daniel Vaiman; Francisco Miralles
Journal:  Front Cell Dev Biol       Date:  2021-05-13

Review 6.  Genetic Background of Fetal Growth Restriction.

Authors:  Beata Anna Nowakowska; Katarzyna Pankiewicz; Urszula Nowacka; Magdalena Niemiec; Szymon Kozłowski; Tadeusz Issat
Journal:  Int J Mol Sci       Date:  2021-12-21       Impact factor: 5.923

7.  Early-pregnancy prediction of risk for pre-eclampsia using maternal blood leptin/ceramide ratio: discovery and confirmation.

Authors:  Qianyang Huang; Shiying Hao; Jin You; Xiaoming Yao; Zhen Li; James Schilling; Sheeno Thyparambil; Wei-Li Liao; Xin Zhou; Lihong Mo; Subhashini Ladella; Shantay R Davies-Balch; Hangyi Zhao; David Fan; John C Whitin; Harvey J Cohen; Doff B McElhinney; Ronald J Wong; Gary M Shaw; David K Stevenson; Karl G Sylvester; Xuefeng B Ling
Journal:  BMJ Open       Date:  2021-11-25       Impact factor: 3.006

8.  Human Immune System Diseasome Networks and Female Oviductal Microenvironment: New Horizons to be Discovered.

Authors:  Angela Taraschi; Costanza Cimini; Alessia Colosimo; Marina Ramal-Sanchez; Fadl Moussa; Samia Mokh; Luca Valbonetti; Giulia Capacchietti; Israiel Tagaram; Nicola Bernabò; Barbara Barboni
Journal:  Front Genet       Date:  2022-01-27       Impact factor: 4.599

9.  Paired maternal and fetal metabolomics reveal a differential fingerprint in preeclampsia versus fetal growth restriction.

Authors:  Lina Youssef; Rui V Simões; Jezid Miranda; María Luisa García-Martín; Cristina Paules; Francesca Crovetto; Nuria Amigó; Nicolau Cañellas; Eduard Gratacos; Fatima Crispi
Journal:  Sci Rep       Date:  2021-07-13       Impact factor: 4.379

10.  δ-tocotrienol suppresses the migration and angiogenesis of trophoblasts in preeclampsia and promotes their apoptosis via miR-429/ ZEB1 axis.

Authors:  Mei Shi; Xiuyun Chen; Hui Li; Lixia Zheng
Journal:  Bioengineered       Date:  2021-12       Impact factor: 3.269

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