Literature DB >> 32055031

The nf-core framework for community-curated bioinformatics pipelines.

Philip A Ewels1, Alexander Peltzer2, Sven Fillinger2, Harshil Patel3, Johannes Alneberg4, Andreas Wilm5, Maxime Ulysse Garcia6, Paolo Di Tommaso7,8, Sven Nahnsen9.   

Abstract

Mesh:

Year:  2020        PMID: 32055031     DOI: 10.1038/s41587-020-0439-x

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


× No keyword cloud information.
  1 in total

Review 1.  A review of bioinformatic pipeline frameworks.

Authors:  Jeremy Leipzig
Journal:  Brief Bioinform       Date:  2017-05-01       Impact factor: 11.622

  1 in total
  193 in total

1.  Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes.

Authors:  Peter A Crisp; Alexandre P Marand; Jaclyn M Noshay; Peng Zhou; Zefu Lu; Robert J Schmitz; Nathan M Springer
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-02       Impact factor: 11.205

2.  Countering reproducibility issues in mathematical models with software engineering techniques: A case study using a one-dimensional mathematical model of the atrioventricular node.

Authors:  Christopher Schölzel; Valeria Blesius; Gernot Ernst; Alexander Goesmann; Andreas Dominik
Journal:  PLoS One       Date:  2021-07-19       Impact factor: 3.240

3.  Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions.

Authors:  Daniel J Butler; Christopher Mozsary; Cem Meydan; David Danko; Jonathan Foox; Joel Rosiene; Alon Shaiber; Ebrahim Afshinnekoo; Matthew MacKay; Fritz J Sedlazeck; Nikolay A Ivanov; Maria Sierra; Diana Pohle; Michael Zietz; Undina Gisladottir; Vijendra Ramlall; Craig D Westover; Krista Ryon; Benjamin Young; Chandrima Bhattacharya; Phyllis Ruggiero; Bradley W Langhorst; Nathan Tanner; Justyna Gawrys; Dmitry Meleshko; Dong Xu; Peter A D Steel; Amos J Shemesh; Jenny Xiang; Jean Thierry-Mieg; Danielle Thierry-Mieg; Robert E Schwartz; Angelika Iftner; Daniela Bezdan; John Sipley; Lin Cong; Arryn Craney; Priya Velu; Ari M Melnick; Iman Hajirasouliha; Stacy M Horner; Thomas Iftner; Mirella Salvatore; Massimo Loda; Lars F Westblade; Melissa Cushing; Shawn Levy; Shixiu Wu; Nicholas Tatonetti; Marcin Imielinski; Hanna Rennert; Christopher E Mason
Journal:  bioRxiv       Date:  2020-05-01

Review 4.  Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.

Authors:  Franziska Hufsky; Kevin Lamkiewicz; Alexandre Almeida; Abdel Aouacheria; Cecilia Arighi; Alex Bateman; Jan Baumbach; Niko Beerenwinkel; Christian Brandt; Marco Cacciabue; Sara Chuguransky; Oliver Drechsel; Robert D Finn; Adrian Fritz; Stephan Fuchs; Georges Hattab; Anne-Christin Hauschild; Dominik Heider; Marie Hoffmann; Martin Hölzer; Stefan Hoops; Lars Kaderali; Ioanna Kalvari; Max von Kleist; Renó Kmiecinski; Denise Kühnert; Gorka Lasso; Pieter Libin; Markus List; Hannah F Löchel; Maria J Martin; Roman Martin; Julian Matschinske; Alice C McHardy; Pedro Mendes; Jaina Mistry; Vincent Navratil; Eric P Nawrocki; Áine Niamh O'Toole; Nancy Ontiveros-Palacios; Anton I Petrov; Guillermo Rangel-Pineros; Nicole Redaschi; Susanne Reimering; Knut Reinert; Alejandro Reyes; Lorna Richardson; David L Robertson; Sepideh Sadegh; Joshua B Singer; Kristof Theys; Chris Upton; Marius Welzel; Lowri Williams; Manja Marz
Journal:  Brief Bioinform       Date:  2021-03-22       Impact factor: 11.622

5.  Implications for preeclampsia: hypoxia-induced Notch promotes trophoblast migration.

Authors:  Barry E Perlman; Audrey A Merriam; Alexander Lemenze; Qingshi Zhao; Salma Begum; Mohan Nair; Tracy Wu; Ronald J Wapner; Jan K Kitajewski; Carrie J Shawber; Nataki C Douglas
Journal:  Reproduction       Date:  2021-05-14       Impact factor: 3.906

6.  Meta-omics Reveal Gallionellaceae and Rhodanobacter Species as Interdependent Key Players for Fe(II) Oxidation and Nitrate Reduction in the Autotrophic Enrichment Culture KS.

Authors:  Yu-Ming Huang; Daniel Straub; Nia Blackwell; Andreas Kappler; Sara Kleindienst
Journal:  Appl Environ Microbiol       Date:  2021-07-13       Impact factor: 4.792

7.  Cloudy with a Chance of Peptides: Accessibility, Scalability, and Reproducibility with Cloud-Hosted Environments.

Authors:  Benjamin A Neely
Journal:  J Proteome Res       Date:  2021-01-29       Impact factor: 4.466

8.  RNA-Mediated Feedback Control of Transcriptional Condensates.

Authors:  Jonathan E Henninger; Ozgur Oksuz; Krishna Shrinivas; Ido Sagi; Gary LeRoy; Ming M Zheng; J Owen Andrews; Alicia V Zamudio; Charalampos Lazaris; Nancy M Hannett; Tong Ihn Lee; Phillip A Sharp; Ibrahim I Cissé; Arup K Chakraborty; Richard A Young
Journal:  Cell       Date:  2020-12-16       Impact factor: 41.582

9.  Initiation of a conserved trophectoderm program in human, cow and mouse embryos.

Authors:  Claudia Gerri; Afshan McCarthy; Gregorio Alanis-Lobato; Andrej Demtschenko; Alexandre Bruneau; Sophie Loubersac; Norah M E Fogarty; Daniel Hampshire; Kay Elder; Phil Snell; Leila Christie; Laurent David; Hilde Van de Velde; Ali A Fouladi-Nashta; Kathy K Niakan
Journal:  Nature       Date:  2020-09-23       Impact factor: 49.962

10.  Molecular docking-aided identification of small molecule inhibitors targeting β-catenin-TCF4 interaction.

Authors:  Joo-Leng Low; Weina Du; Tenzin Gocha; Gokce Oguz; Xiaoqian Zhang; Ming Wei Chen; Srdan Masirevic; Daniel Guo Rong Yim; Iain Bee Huat Tan; Adaikalavan Ramasamy; Hao Fan; Ramanuj DasGupta
Journal:  iScience       Date:  2021-05-15
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.