Literature DB >> 32040349

RNA Droplets.

Kevin Rhine1, Velinda Vidaurre1, Sua Myong2,3.   

Abstract

Liquid-liquid phase separation is emerging as the universal mechanism by which membraneless cellular granules form. Despite many previous studies on condensation of intrinsically disordered proteins and low complexity domains, we lack understanding about the role of RNA, which is the essential component of all ribonucleoprotein (RNP) granules. RNA, as an anionic polymer, is inherently an excellent platform for achieving multivalency and can accommodate many RNA binding proteins. Recent findings have highlighted the diverse function of RNA in tuning phase-separation propensity up or down, altering viscoelastic properties and thereby driving immiscibility between different condensates. In addition to contributing to the biophysical properties of droplets, RNA is a functionally critical constituent that defines the identity of cellular condensates and controls the temporal and spatial distribution of specific RNP granules. In this review, we summarize what we have learned so far about such roles of RNA in the context of in vitro and in vivo studies.

Entities:  

Keywords:  RNA; RNA binding protein; aberrant aggregation; liquid–liquid phase separation; multivalency; polymer

Mesh:

Substances:

Year:  2020        PMID: 32040349      PMCID: PMC7695521          DOI: 10.1146/annurev-biophys-052118-115508

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  106 in total

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Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

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3.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

4.  Phase separation drives heterochromatin domain formation.

Authors:  Amy R Strom; Alexander V Emelyanov; Mustafa Mir; Dmitry V Fyodorov; Xavier Darzacq; Gary H Karpen
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

5.  The Hsp104 N-terminal domain enables disaggregase plasticity and potentiation.

Authors:  Elizabeth A Sweeny; Meredith E Jackrel; Michelle S Go; Matthew A Sochor; Beatrice M Razzo; Morgan E DeSantis; Kushol Gupta; James Shorter
Journal:  Mol Cell       Date:  2015-01-22       Impact factor: 17.970

6.  Nuclear-Import Receptors Reverse Aberrant Phase Transitions of RNA-Binding Proteins with Prion-like Domains.

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Journal:  Cell       Date:  2018-04-19       Impact factor: 41.582

7.  mRNP architecture in translating and stress conditions reveals an ordered pathway of mRNP compaction.

Authors:  Anthony Khong; Roy Parker
Journal:  J Cell Biol       Date:  2018-10-15       Impact factor: 10.539

8.  RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome.

Authors:  Briana Van Treeck; David S W Protter; Tyler Matheny; Anthony Khong; Christopher D Link; Roy Parker
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-26       Impact factor: 11.205

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Authors:  Jacob C Schwartz; Xueyin Wang; Elaine R Podell; Thomas R Cech
Journal:  Cell Rep       Date:  2013-11-21       Impact factor: 9.423

10.  Sequence-dependent but not sequence-specific piRNA adhesion traps mRNAs to the germ plasm.

Authors:  Anastassios Vourekas; Panagiotis Alexiou; Nicholas Vrettos; Manolis Maragkakis; Zissimos Mourelatos
Journal:  Nature       Date:  2016-03-07       Impact factor: 49.962

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  24 in total

Review 1.  Non-coding RNAs in chromatin folding and nuclear organization.

Authors:  Sergey V Razin; Alexey A Gavrilov
Journal:  Cell Mol Life Sci       Date:  2021-06-11       Impact factor: 9.261

Review 2.  Phase Separation in Germ Cells and Development.

Authors:  Anne E Dodson; Scott Kennedy
Journal:  Dev Cell       Date:  2020-10-01       Impact factor: 12.270

Review 3.  The structure and phase of tau: from monomer to amyloid filament.

Authors:  Yifan Zeng; Jing Yang; Bailing Zhang; Meng Gao; Zhengding Su; Yongqi Huang
Journal:  Cell Mol Life Sci       Date:  2020-10-19       Impact factor: 9.261

Review 4.  The Structure Biology of Tau and Clue for Aggregation Inhibitor Design.

Authors:  Dan Wang; Xianlong Huang; Lu Yan; Luoqi Zhou; Chang Yan; Jinhu Wu; Zhengding Su; Yongqi Huang
Journal:  Protein J       Date:  2021-08-17       Impact factor: 2.371

5.  The Non-continuum Nature of Eukaryotic Transcriptional Regulation.

Authors:  Gregory M K Poon
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

6.  Generation and Biochemical Characterization of Phase-Separated Droplets Formed by Nucleic Acid Binding Proteins: Using HP1 as a Model System.

Authors:  Serena Sanulli; Geeta J Narlikar
Journal:  Curr Protoc       Date:  2021-05

7.  Thermodynamics and kinetics of phase separation of protein-RNA mixtures by a minimal model.

Authors:  Jerelle A Joseph; Jorge R Espinosa; Ignacio Sanchez-Burgos; Adiran Garaizar; Daan Frenkel; Rosana Collepardo-Guevara
Journal:  Biophys J       Date:  2021-02-09       Impact factor: 4.033

Review 8.  Molecular mechanisms underlying nucleotide repeat expansion disorders.

Authors:  Indranil Malik; Chase P Kelley; Eric T Wang; Peter K Todd
Journal:  Nat Rev Mol Cell Biol       Date:  2021-06-17       Impact factor: 113.915

Review 9.  Higher-order organization of biomolecular condensates.

Authors:  Charlotte M Fare; Alexis Villani; Lauren E Drake; James Shorter
Journal:  Open Biol       Date:  2021-06-16       Impact factor: 6.411

10.  Liquid-liquid phase separation driven compartmentalization of reactive nucleoplasm.

Authors:  Rabia Laghmach; Davit A Potoyan
Journal:  Phys Biol       Date:  2021-01-07       Impact factor: 2.583

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