Literature DB >> 32037441

Identification and activity of the functional complex between hnRNPL and the pseudoexfoliation syndrome-associated lncRNA, LOXL1-AS1.

Heather M Schmitt1, William M Johnson1, Inas F Aboobakar1, Shelby Strickland2, María Gomez-Caraballo1, Megan Parker1, Laura Finnegan1,3, David L Corcoran4, Nikolai P Skiba1, R Rand Allingham1, Michael A Hauser1,2,5, W Daniel Stamer1.   

Abstract

Individuals with pseudoexfoliation (PEX) syndrome exhibit various connective tissue pathologies associated with dysregulated extracellular matrix homeostasis. PEX glaucoma is a common, aggressive form of open-angle glaucoma resulting from the deposition of fibrillary material in the conventional outflow pathway. However, the molecular mechanisms that drive pathogenesis and genetic risk remain poorly understood. PEX glaucoma-associated single-nucleotide polymorphisms are located in and affect activity of the promoter of LOXL1-AS1, a long non-coding RNA (lncRNA). Nuclear and non-nuclear lncRNAs regulate a host of biological processes, and when dysregulated, contribute to disease. Here we report that LOXL1-AS1 localizes to the nucleus where it selectively binds to the mRNA processing protein, heterogeneous nuclear ribonucleoprotein-L (hnRNPL). Both components of this complex are critical for the regulation of global gene expression in ocular cells, making LOXL1-AS1 a prime target for investigation in PEX syndrome and glaucoma.
© The Author(s) 2020. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Entities:  

Year:  2020        PMID: 32037441      PMCID: PMC7390937          DOI: 10.1093/hmg/ddaa021

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   6.150


  58 in total

1.  Involvement of human release factors eRF3a and eRF3b in translation termination and regulation of the termination complex formation.

Authors:  Céline Chauvin; Samia Salhi; Catherine Le Goff; Wildriss Viranaicken; Dialo Diop; Olivier Jean-Jean
Journal:  Mol Cell Biol       Date:  2005-07       Impact factor: 4.272

Review 2.  Molecular pathology of pseudoexfoliation syndrome/glaucoma--new insights from LOXL1 gene associations.

Authors:  Ursula Schlötzer-Schrehardt
Journal:  Exp Eye Res       Date:  2008-09-06       Impact factor: 3.467

3.  STAR: ultrafast universal RNA-seq aligner.

Authors:  Alexander Dobin; Carrie A Davis; Felix Schlesinger; Jorg Drenkow; Chris Zaleski; Sonali Jha; Philippe Batut; Mark Chaisson; Thomas R Gingeras
Journal:  Bioinformatics       Date:  2012-10-25       Impact factor: 6.937

4.  Fiji: an open-source platform for biological-image analysis.

Authors:  Johannes Schindelin; Ignacio Arganda-Carreras; Erwin Frise; Verena Kaynig; Mark Longair; Tobias Pietzsch; Stephan Preibisch; Curtis Rueden; Stephan Saalfeld; Benjamin Schmid; Jean-Yves Tinevez; Daniel James White; Volker Hartenstein; Kevin Eliceiri; Pavel Tomancak; Albert Cardona
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

5.  An atlas of human long non-coding RNAs with accurate 5' ends.

Authors:  Chung-Chau Hon; Jordan A Ramilowski; Jayson Harshbarger; Nicolas Bertin; Owen J L Rackham; Julian Gough; Elena Denisenko; Sebastian Schmeier; Thomas M Poulsen; Jessica Severin; Marina Lizio; Hideya Kawaji; Takeya Kasukawa; Masayoshi Itoh; A Maxwell Burroughs; Shohei Noma; Sarah Djebali; Tanvir Alam; Yulia A Medvedeva; Alison C Testa; Leonard Lipovich; Chi-Wai Yip; Imad Abugessaisa; Mickaël Mendez; Akira Hasegawa; Dave Tang; Timo Lassmann; Peter Heutink; Magda Babina; Christine A Wells; Soichi Kojima; Yukio Nakamura; Harukazu Suzuki; Carsten O Daub; Michiel J L de Hoon; Erik Arner; Yoshihide Hayashizaki; Piero Carninci; Alistair R R Forrest
Journal:  Nature       Date:  2017-03-01       Impact factor: 49.962

6.  Regulation of plasticity and fibrogenic activity of trabecular meshwork cells by Rho GTPase signaling.

Authors:  Padmanabhan P Pattabiraman; Rupalatha Maddala; Ponugoti Vasantha Rao
Journal:  J Cell Physiol       Date:  2014-07       Impact factor: 6.384

7.  The transcription factor gene FOXC1 exhibits a limited role in primary congenital glaucoma.

Authors:  Subhabrata Chakrabarti; Kiranpreet Kaur; Kollu Nageswara Rao; Anil K Mandal; Inderjeet Kaur; Rajul S Parikh; Ravi Thomas
Journal:  Invest Ophthalmol Vis Sci       Date:  2008-08-15       Impact factor: 4.799

8.  Common sequence variants in the LOXL1 gene confer susceptibility to exfoliation glaucoma.

Authors:  Gudmar Thorleifsson; Kristinn P Magnusson; Patrick Sulem; G Bragi Walters; Daniel F Gudbjartsson; Hreinn Stefansson; Thorlakur Jonsson; Adalbjorg Jonasdottir; Aslaug Jonasdottir; Gerdur Stefansdottir; Gisli Masson; Gudmundur A Hardarson; Hjorvar Petursson; Arsaell Arnarsson; Mehdi Motallebipour; Ola Wallerman; Claes Wadelius; Jeffrey R Gulcher; Unnur Thorsteinsdottir; Augustine Kong; Fridbert Jonasson; Kari Stefansson
Journal:  Science       Date:  2007-08-09       Impact factor: 47.728

9.  A compendium of RNA-binding motifs for decoding gene regulation.

Authors:  Debashish Ray; Hilal Kazan; Kate B Cook; Matthew T Weirauch; Hamed S Najafabadi; Xiao Li; Serge Gueroussov; Mihai Albu; Hong Zheng; Ally Yang; Hong Na; Manuel Irimia; Leah H Matzat; Ryan K Dale; Sarah A Smith; Christopher A Yarosh; Seth M Kelly; Behnam Nabet; Desirea Mecenas; Weimin Li; Rakesh S Laishram; Mei Qiao; Howard D Lipshitz; Fabio Piano; Anita H Corbett; Russ P Carstens; Brendan J Frey; Richard A Anderson; Kristen W Lynch; Luiz O F Penalva; Elissa P Lei; Andrew G Fraser; Benjamin J Blencowe; Quaid D Morris; Timothy R Hughes
Journal:  Nature       Date:  2013-07-11       Impact factor: 49.962

10.  The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Authors:  Thomas Derrien; Rory Johnson; Giovanni Bussotti; Andrea Tanzer; Sarah Djebali; Hagen Tilgner; Gregory Guernec; David Martin; Angelika Merkel; David G Knowles; Julien Lagarde; Lavanya Veeravalli; Xiaoan Ruan; Yijun Ruan; Timo Lassmann; Piero Carninci; James B Brown; Leonard Lipovich; Jose M Gonzalez; Mark Thomas; Carrie A Davis; Ramin Shiekhattar; Thomas R Gingeras; Tim J Hubbard; Cedric Notredame; Jennifer Harrow; Roderic Guigó
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043

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  3 in total

Review 1.  The genetics of glaucoma: Disease associations, personalised risk assessment and therapeutic opportunities-A review.

Authors:  Inas F Aboobakar; Janey L Wiggs
Journal:  Clin Exp Ophthalmol       Date:  2022-01-17       Impact factor: 4.383

2.  Identification of missense MAB21L1 variants in microphthalmia and aniridia.

Authors:  Sarah E Seese; Linda M Reis; Brett Deml; Christopher Griffith; Adi Reich; Robyn V Jamieson; Elena V Semina
Journal:  Hum Mutat       Date:  2021-05-24       Impact factor: 4.878

Review 3.  Emerging roles of oxidative stress in the pathogenesis of pseudoexfoliation syndrome (Review).

Authors:  Stylianos Mastronikolis; Marina Pagkalou; Panagiotis Plotas; Konstantinos Kagkelaris; Constantinos D Georgakopoulos
Journal:  Exp Ther Med       Date:  2022-07-28       Impact factor: 2.751

  3 in total

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