Literature DB >> 32035656

What Is a Transcriptional Burst?

Edward Tunnacliffe1, Jonathan R Chubb2.   

Abstract

The idea that gene activity can be discontinuous will not surprise many biologists - many genes are restricted in when and where they can be expressed. Yet during the past 15 years, a collection of observations compiled under the umbrella term 'transcriptional bursting' has received considerable interest. Direct visualization of the dynamics of discontinuous transcription has expanded our understanding of basic transcriptional mechanisms and their regulation and provides a real-time readout of gene activity during the life of a cell. In this review, we try to reconcile the different views of the transcriptional process emerging from studies of bursting, and how this work contextualizes the relative importance of different regulatory inputs to normal dynamic ranges of gene activity.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Keywords:  MS2; single-cell gene expression; smFISH; stochastic gene expression; transcriptional bursting

Mesh:

Substances:

Year:  2020        PMID: 32035656     DOI: 10.1016/j.tig.2020.01.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  35 in total

Review 1.  The epigenetic basis of cellular heterogeneity.

Authors:  Benjamin Carter; Keji Zhao
Journal:  Nat Rev Genet       Date:  2020-11-26       Impact factor: 53.242

2.  A Stochastic Model of Gene Expression with Polymerase Recruitment and Pause Release.

Authors:  Zhixing Cao; Tatiana Filatova; Diego A Oyarzún; Ramon Grima
Journal:  Biophys J       Date:  2020-08-03       Impact factor: 4.033

Review 3.  The use of machine learning to discover regulatory networks controlling biological systems.

Authors:  Rossin Erbe; Jessica Gore; Kelly Gemmill; Daria A Gaykalova; Elana J Fertig
Journal:  Mol Cell       Date:  2022-01-10       Impact factor: 17.970

4.  Reduction in gene expression noise by targeted increase in accessibility at gene loci.

Authors:  LaTasha C R Fraser; Ryan J Dikdan; Supravat Dey; Abhyudai Singh; Sanjay Tyagi
Journal:  Proc Natl Acad Sci U S A       Date:  2021-10-19       Impact factor: 11.205

Review 5.  Transcriptional enhancers at 40: evolution of a viral DNA element to nuclear architectural structures.

Authors:  Sreejith J Nair; Tom Suter; Susan Wang; Lu Yang; Feng Yang; Michael G Rosenfeld
Journal:  Trends Genet       Date:  2022-07-07       Impact factor: 11.821

6.  SnapShot: The Regulatory Genome.

Authors:  X Y Bing; P J Batut; M Levo; M Levine; J Raimundo
Journal:  Cell       Date:  2020-09-17       Impact factor: 41.582

Review 7.  Mechanical Regulation of Transcription: Recent Advances.

Authors:  Kaustubh Wagh; Momoko Ishikawa; David A Garcia; Diana A Stavreva; Arpita Upadhyaya; Gordon L Hager
Journal:  Trends Cell Biol       Date:  2021-03-09       Impact factor: 20.808

Review 8.  Enhancer-promoter communication: hubs or loops?

Authors:  Bomyi Lim; Michael S Levine
Journal:  Curr Opin Genet Dev       Date:  2020-11-14       Impact factor: 5.578

9.  RNA-Mediated Feedback Control of Transcriptional Condensates.

Authors:  Jonathan E Henninger; Ozgur Oksuz; Krishna Shrinivas; Ido Sagi; Gary LeRoy; Ming M Zheng; J Owen Andrews; Alicia V Zamudio; Charalampos Lazaris; Nancy M Hannett; Tong Ihn Lee; Phillip A Sharp; Ibrahim I Cissé; Arup K Chakraborty; Richard A Young
Journal:  Cell       Date:  2020-12-16       Impact factor: 41.582

10.  Capicua is a fast-acting transcriptional brake.

Authors:  Aleena L Patel; Lili Zhang; Shannon E Keenan; Christine A Rushlow; Cécile Fradin; Stanislav Y Shvartsman
Journal:  Curr Biol       Date:  2021-06-23       Impact factor: 10.900

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