Literature DB >> 32019864

How Complementary Targets Expose the microRNA 3' End for Tailing and Trimming during Target-Directed microRNA Degradation.

Paulina Pawlica1, Jessica Sheu-Gruttadauria2, Ian J MacRae2, Joan A Steitz1.   

Abstract

microRNAs (miRNAs) are crucial for posttranscriptional regulation of messenger RNAs. "Classical" miRNA targets predominantly interact with the miRNA seed sequence located near the miRNA 5' end. Interestingly, certain transcripts that exhibit extensive complementarity to the miRNAs 3' region, instead of being subjected to regulation, induce miRNA decay in a process termed target-directed miRNA degradation (TDMD). Here, we review recent advances in understanding the molecular mechanisms of TDMD. Specifically, we discuss how extensive miRNA complementarity to TDMD-inducing targets results in displacement of the miRNA 3' end from its protective pocket in the Argonaute protein. Unprotected miRNA 3' ends are then available for enzymatic attack by still-unidentified cellular enzymes. Identification of these cellular enzymes and discovery of additional TDMD-inducing transcripts are subjects for future research.
© 2019 Pawlica et al.; Published by Cold Spring Harbor Laboratory Press.

Entities:  

Year:  2020        PMID: 32019864      PMCID: PMC9161719          DOI: 10.1101/sqb.2019.84.039321

Source DB:  PubMed          Journal:  Cold Spring Harb Symp Quant Biol        ISSN: 0091-7451


  35 in total

1.  A Network of Noncoding Regulatory RNAs Acts in the Mammalian Brain.

Authors:  Benjamin Kleaveland; Charlie Y Shi; Joanna Stefano; David P Bartel
Journal:  Cell       Date:  2018-06-07       Impact factor: 41.582

2.  Structural Basis for Target-Directed MicroRNA Degradation.

Authors:  Jessica Sheu-Gruttadauria; Paulina Pawlica; Shannon M Klum; Sonia Wang; Therese A Yario; Nicole T Schirle Oakdale; Joan A Steitz; Ian J MacRae
Journal:  Mol Cell       Date:  2019-07-25       Impact factor: 17.970

Review 3.  Novel roles for Sm-class RNAs in the regulation of gene expression.

Authors:  Demián Cazalla
Journal:  RNA Biol       Date:  2018-07-09       Impact factor: 4.652

Review 4.  Metazoan MicroRNAs.

Authors:  David P Bartel
Journal:  Cell       Date:  2018-03-22       Impact factor: 41.582

5.  MicroRNA destabilization enables dynamic regulation of the miR-16 family in response to cell-cycle changes.

Authors:  Olivia S Rissland; Sue-Jean Hong; David P Bartel
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

6.  Selective degradation of host MicroRNAs by an intergenic HCMV noncoding RNA accelerates virus production.

Authors:  Sanghyun Lee; Jaewon Song; Sungchul Kim; Jongkyu Kim; Yujin Hong; Youngkyun Kim; Donghyun Kim; Daehyun Baek; Kwangseog Ahn
Journal:  Cell Host Microbe       Date:  2013-06-12       Impact factor: 21.023

7.  Target RNA-directed trimming and tailing of small silencing RNAs.

Authors:  Stefan L Ameres; Michael D Horwich; Jui-Hung Hung; Jia Xu; Megha Ghildiyal; Zhiping Weng; Phillip D Zamore
Journal:  Science       Date:  2010-06-18       Impact factor: 47.728

8.  Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo.

Authors:  Lisa Marcinowski; Mélanie Tanguy; Astrid Krmpotic; Bernd Rädle; Vanda J Lisnić; Lee Tuddenham; Béatrice Chane-Woon-Ming; Zsolt Ruzsics; Florian Erhard; Corinna Benkartek; Marina Babic; Ralf Zimmer; Joanne Trgovcich; Ulrich H Koszinowski; Stipan Jonjic; Sébastien Pfeffer; Lars Dölken
Journal:  PLoS Pathog       Date:  2012-02-09       Impact factor: 6.823

9.  Mechanism of Dis3l2 substrate recognition in the Lin28-let-7 pathway.

Authors:  Christopher R Faehnle; Jack Walleshauser; Leemor Joshua-Tor
Journal:  Nature       Date:  2014-08-03       Impact factor: 49.962

10.  3' Uridylation controls mature microRNA turnover during CD4 T-cell activation.

Authors:  Cristina Gutiérrez-Vázquez; Anton J Enright; Ana Rodríguez-Galán; Arantxa Pérez-García; Paul Collier; Matthew R Jones; Vladimir Benes; Joseph P Mizgerd; María Mittelbrunn; Almudena R Ramiro; Francisco Sánchez-Madrid
Journal:  RNA       Date:  2017-03-28       Impact factor: 4.942

View more
  8 in total

Review 1.  miRNA degradation in the mammalian brain.

Authors:  Chun K Kim; Toni R Pak
Journal:  Am J Physiol Cell Physiol       Date:  2020-08-12       Impact factor: 4.249

Review 2.  Learning noncoding RNA biology from viruses.

Authors:  Demián Cazalla
Journal:  Mamm Genome       Date:  2021-09-07       Impact factor: 2.957

3.  Single-molecule FRET uncovers hidden conformations and dynamics of human Argonaute 2.

Authors:  Sarah Willkomm; Leonhard Jakob; Kevin Kramm; Veronika Graus; Julia Neumeier; Gunter Meister; Dina Grohmann
Journal:  Nat Commun       Date:  2022-07-02       Impact factor: 17.694

4.  Critical contribution of 3' non-seed base pairing to the in vivo function of the evolutionarily conserved let-7a microRNA.

Authors:  Ye Duan; Isana Veksler-Lublinsky; Victor Ambros
Journal:  Cell Rep       Date:  2022-04-26       Impact factor: 9.995

5.  SARS-CoV-2 expresses a microRNA-like small RNA able to selectively repress host genes.

Authors:  Paulina Pawlica; Therese A Yario; Sylvia White; Jianhui Wang; Walter N Moss; Pei Hui; Joseph M Vinetz; Joan A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-13       Impact factor: 11.205

Review 6.  microRNA-Based Biomarkers in Alzheimer's Disease (AD).

Authors:  Yuhai Zhao; Vivian Jaber; Peter N Alexandrov; Andrea Vergallo; Simone Lista; Harald Hampel; Walter J Lukiw
Journal:  Front Neurosci       Date:  2020-10-30       Impact factor: 4.677

Review 7.  The Secret Garden of Neuronal circRNAs.

Authors:  Silvia Gasparini; Valerio Licursi; Carlo Presutti; Cecilia Mannironi
Journal:  Cells       Date:  2020-07-31       Impact factor: 6.600

Review 8.  The Role of MicroRNAs in Proteostasis Decline and Protein Aggregation during Brain and Skeletal Muscle Aging.

Authors:  Stephany Francisco; Vera Martinho; Margarida Ferreira; Andreia Reis; Gabriela Moura; Ana Raquel Soares; Manuel A S Santos
Journal:  Int J Mol Sci       Date:  2022-03-17       Impact factor: 5.923

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.