Literature DB >> 34491378

Learning noncoding RNA biology from viruses.

Demián Cazalla1.   

Abstract

Insights into interactions between viral factors and the cellular machinery usually lead to discoveries concerning host cell biology. Thus, the gene expression field has historically relied on viral model systems to discover mechanisms underlying different cellular processes. In recent years, the functional characterization of the small nuclear noncoding RNAs expressed by the oncogenic Herpesvirus saimiri, called HSURs, resulted in the discovery of two mechanisms for the regulation of gene expression. HSUR1 and HSUR2 associate with host microRNAs, which are small noncoding RNAs that broadly regulate gene expression by binding to messenger RNAs. HSUR1 provided the first example of a process known as target-directed miRNA degradation that operates in cells to regulate miRNA populations. HSUR2 functions as a miRNA adaptor, uncovering an entirely new, indirect mechanism by which miRNAs can inhibit mRNA function. Here, I review the path that led to these discoveries and their implications and postulate new exciting questions about the functions of these fascinating viral noncoding RNAs.
© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

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Year:  2021        PMID: 34491378     DOI: 10.1007/s00335-021-09915-y

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  77 in total

Review 1.  Cell cycle and death control: long live Forkheads.

Authors:  Boudewijn M T Burgering; Geert J P L Kops
Journal:  Trends Biochem Sci       Date:  2002-07       Impact factor: 13.807

Review 2.  MicroRNA binding sites in the coding region of mRNAs: extending the repertoire of post-transcriptional gene regulation.

Authors:  Anneke Brümmer; Jean Hausser
Journal:  Bioessays       Date:  2014-04-15       Impact factor: 4.345

3.  In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation.

Authors:  Jong Ghut Ashley Aw; Yang Shen; Andreas Wilm; Miao Sun; Xin Ni Lim; Kum-Loong Boon; Sidika Tapsin; Yun-Shen Chan; Cheng-Peow Tan; Adelene Y L Sim; Tong Zhang; Teodorus Theo Susanto; Zhiyan Fu; Niranjan Nagarajan; Yue Wan
Journal:  Mol Cell       Date:  2016-05-12       Impact factor: 17.970

Review 4.  Metazoan MicroRNAs.

Authors:  David P Bartel
Journal:  Cell       Date:  2018-03-22       Impact factor: 41.582

Review 5.  The Role of Forkhead Box 1 (FOXO1) in the Immune System: Dendritic Cells, T Cells, B Cells, and Hematopoietic Stem Cells.

Authors:  Adriana Alicia Cabrera-Ortega; Daniel Feinberg; Youde Liang; Carlos Rossa; Dana T Graves
Journal:  Crit Rev Immunol       Date:  2017       Impact factor: 2.214

6.  RIC-seq for global in situ profiling of RNA-RNA spatial interactions.

Authors:  Zhaokui Cai; Changchang Cao; Lei Ji; Rong Ye; Di Wang; Cong Xia; Sui Wang; Zongchang Du; Naijing Hu; Xiaohua Yu; Juan Chen; Lei Wang; Xianguang Yang; Shunmin He; Yuanchao Xue
Journal:  Nature       Date:  2020-05-06       Impact factor: 49.962

7.  The miR-15a-miR-16-1 cluster controls prostate cancer by targeting multiple oncogenic activities.

Authors:  Désirée Bonci; Valeria Coppola; Maria Musumeci; Antonio Addario; Raffaella Giuffrida; Lorenzo Memeo; Leonardo D'Urso; Alfredo Pagliuca; Mauro Biffoni; Catherine Labbaye; Monica Bartucci; Giovanni Muto; Cesare Peschle; Ruggero De Maria
Journal:  Nat Med       Date:  2008-10-19       Impact factor: 53.440

8.  MicroRNA degradation by a conserved target RNA regulates animal behavior.

Authors:  Angelo Bitetti; Allison C Mallory; Elisabetta Golini; Claudia Carrieri; Héctor Carreño Gutiérrez; Emerald Perlas; Yuvia A Pérez-Rico; Glauco P Tocchini-Valentini; Anton J Enright; William H J Norton; Silvia Mandillo; Dónal O'Carroll; Alena Shkumatava
Journal:  Nat Struct Mol Biol       Date:  2018-02-26       Impact factor: 15.369

9.  Post-transcriptional regulation of miR-27 in murine cytomegalovirus infection.

Authors:  Amy H Buck; Jonathan Perot; Michael A Chisholm; Diwakar S Kumar; Lee Tuddenham; Valérie Cognat; Lisa Marcinowski; Lars Dölken; Sébastien Pfeffer
Journal:  RNA       Date:  2010-01-04       Impact factor: 4.942

10.  Target RNA-directed trimming and tailing of small silencing RNAs.

Authors:  Stefan L Ameres; Michael D Horwich; Jui-Hung Hung; Jia Xu; Megha Ghildiyal; Zhiping Weng; Phillip D Zamore
Journal:  Science       Date:  2010-06-18       Impact factor: 47.728

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