Literature DB >> 31993984

Parahaliea maris sp. nov., isolated from surface seawater and emended description of the genus Parahaliea.

Yang Liu1, Juan Du1, Jun Zhang1, Qiliang Lai2, Zongze Shao3, Honghui Zhu4.   

Abstract

A Gram-stain-negative strictly aerobic, short-rod-shaped, and non-motile bacterial strain designated HSLHS9T was isolated from surface seawater collected from the South China Sea. Strain HSLHS9T could grow at 15-41°C (optimum 28°C), at pH 5.0-9.0 (optimum 6.0-7.0), and in 0-7% (w/v) NaCl (optimum 2-3%). Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain HSLHS9T shared high identities with the closely related Parahaliea aestuarii S2-26T (98.6%) and Parahaliea mediterranea 7SM29T (97.8%) and formed a distinct lineage within the genus Parahaliea. Wholegenome sequencing of strain HSLHS9T revealed the size of 4.8 Mbp and DNA G + C content of 61.8 mol%. Strain HSLHS9T shared the digital DNA-DNA hybridization values of 22.4% and 23.0%, and the average nucleotide identities of 79.7% and 79.9%, respectively, with the two type strains above. The predominant cellular fatty acids of the strain were summed feature 8 (C18:1ω6c and/or C18:1ω7c), summed feature 3 (C16:1ω7c and/or C16:1ω6c), C17:1ω8c, and C16:0. The sole isoprenoid quinone was identified as Q-8. The polar lipids were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine, aminolipid, and two glycolipids. Based on taxonomic data obtained in this study, it is suggested that strain HSLHS9T represents a novel species of the genus Parahaliea, for which the name Parahaliea maris sp. nov. is proposed. The type strain is HSLHS9T (= MCCC 1A06717T = KCTC 52307T). An emended description of the genus Parahaliea is also provided.

Entities:  

Keywords:  Parahaliea maris; genomic analysis; novel species; polyphasic taxonomy

Mesh:

Substances:

Year:  2020        PMID: 31993984     DOI: 10.1007/s12275-020-9405-z

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  31 in total

1.  List of new names and new combinations previously effectively, but not validly, published.

Authors: 
Journal:  Int J Syst Evol Microbiol       Date:  2006-09       Impact factor: 2.747

2.  Phylogeny of gammaproteobacteria.

Authors:  Kelly P Williams; Joseph J Gillespie; Bruno W S Sobral; Eric K Nordberg; Eric E Snyder; Joshua M Shallom; Allan W Dickerman
Journal:  J Bacteriol       Date:  2010-03-05       Impact factor: 3.490

3.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

4.  Halioglobus japonicus gen. nov., sp. nov. and Halioglobus pacificus sp. nov., members of the class Gammaproteobacteria isolated from seawater.

Authors:  Sanghwa Park; Susumu Yoshizawa; Kentaro Inomata; Kazuhiro Kogure; Akira Yokota
Journal:  Int J Syst Evol Microbiol       Date:  2011-10-10       Impact factor: 2.747

5.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

6.  A large-scale evaluation of algorithms to calculate average nucleotide identity.

Authors:  Seok-Hwan Yoon; Sung-Min Ha; Jeongmin Lim; Soonjae Kwon; Jongsik Chun
Journal:  Antonie Van Leeuwenhoek       Date:  2017-02-15       Impact factor: 2.271

7.  Marimicrobium arenosum gen. nov., sp. nov., a moderately halophilic bacterium isolated from sea sand.

Authors:  Maytiya Konkit; Jong-Hwa Kim; Wonyong Kim
Journal:  Int J Syst Evol Microbiol       Date:  2015-11-26       Impact factor: 2.747

8.  A taxonomic framework for emerging groups of ecologically important marine gammaproteobacteria based on the reconstruction of evolutionary relationships using genome-scale data.

Authors:  Stefan Spring; Carmen Scheuner; Markus Göker; Hans-Peter Klenk
Journal:  Front Microbiol       Date:  2015-04-09       Impact factor: 5.640

9.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Authors:  Donovan H Parks; Michael Imelfort; Connor T Skennerton; Philip Hugenholtz; Gene W Tyson
Journal:  Genome Res       Date:  2015-05-14       Impact factor: 9.043

10.  Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of Chromatocurvus halotolerans.

Authors:  Stefan Spring; Thomas Riedel; Cathrin Spröer; Shi Yan; Jens Harder; Bernhard M Fuchs
Journal:  BMC Microbiol       Date:  2013-05-24       Impact factor: 3.605

View more
  1 in total

1.  Isolation and characterization of tick-borne Roseomonas haemaphysalidis sp. nov. and rodent-borne Roseomonas marmotae sp. nov.

Authors:  Wentao Zhu; Juan Zhou; Shan Lu; Jing Yang; Xin-He Lai; Dong Jin; Ji Pu; Yuyuan Huang; Liyun Liu; Zhenjun Li; Jianguo Xu
Journal:  J Microbiol       Date:  2021-11-26       Impact factor: 3.422

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.