Literature DB >> 31992150

Urbanization without isolation: the absence of genetic structure among cities and forests in the tiny acorn ant Temnothorax nylanderi.

A Khimoun1, C Doums2,3, M Molet4, B Kaufmann5, R Peronnet4, P A Eyer6, S Mona2,3.   

Abstract

Urban alteration of neutral and adaptive evolutionary processes is still underexplored. Using a genome-wide SNP dataset, we investigated (i) urban-induced modifications of population demography, genetic diversity and population structure and (ii) signature of divergent selection between urban and forest populations in the ant species, Temnothorax nylanderi. Our results did not reveal an impact of urbanization on neutral processes since we observed: (i) analogous genetic diversity among paired urban/forest sites and two control populations; (ii) weak population genetic structure explained neither by habitat (urban versus forest) nor by geography; (iii) a remarkably similar demographic history across populations with an ancestral growth followed by a recent decline, regardless of their current habitat or geographical location. The micro-geographical home range of ants may explain their resilience to urbanization. Finally, we detected 19 candidate loci discriminating urban/forest populations and associated with core cellular components, molecular function or biological process. Two of these loci were associated with a gene ontology term that was previously found to belong to a module of co-expressed genes related to caste phenotype. These results call for transcriptomics analyses to identify genes associated with ant social traits and to infer their potential role in urban adaptation.

Entities:  

Keywords:  RADseq; population genomics; random forest; social insects; triploid; urban adaptation

Mesh:

Year:  2020        PMID: 31992150      PMCID: PMC7013475          DOI: 10.1098/rsbl.2019.0741

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  39 in total

1.  Urban heat islands advance the timing of reproduction in a social insect.

Authors:  Lacy D Chick; Stephanie A Strickler; Abe Perez; Ryan A Martin; Sarah E Diamond
Journal:  J Therm Biol       Date:  2019-01-11       Impact factor: 2.902

2.  Accuracy of Demographic Inferences from the Site Frequency Spectrum: The Case of the Yoruba Population.

Authors:  Marguerite Lapierre; Amaury Lambert; Guillaume Achaz
Journal:  Genetics       Date:  2017-03-24       Impact factor: 4.562

Review 3.  What genomic data can reveal about eco-evolutionary dynamics.

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Journal:  Nat Ecol Evol       Date:  2017-11-20       Impact factor: 15.460

4.  Colonization and persistence of urban ant populations as revealed by joint estimation of kinship and population genetic parameters.

Authors:  Junpei Yamamoto; Kei Uchida; Yasuoki Takami
Journal:  J Hered       Date:  2013-07-16       Impact factor: 2.645

5.  Signatures of positive selection and local adaptation to urbanization in white-footed mice (Peromyscus leucopus).

Authors:  Stephen E Harris; Jason Munshi-South
Journal:  Mol Ecol       Date:  2017-10-26       Impact factor: 6.185

6.  Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Authors:  Ana Conesa; Stefan Götz; Juan Miguel García-Gómez; Javier Terol; Manuel Talón; Montserrat Robles
Journal:  Bioinformatics       Date:  2005-08-04       Impact factor: 6.937

7.  Exploring population size changes using SNP frequency spectra.

Authors:  Xiaoming Liu; Yun-Xin Fu
Journal:  Nat Genet       Date:  2015-04-06       Impact factor: 38.330

8.  Recent human history governs global ant invasion dynamics.

Authors:  Cleo Bertelsmeier; Sébastien Ollier; Andrew Liebhold; Laurent Keller
Journal:  Nat Ecol Evol       Date:  2017-06-22       Impact factor: 15.460

9.  Mitochondrial DNA is unsuitable to test for isolation by distance.

Authors:  Peter R Teske; Tirupathi Rao Golla; Jonathan Sandoval-Castillo; Arsalan Emami-Khoyi; Carl D van der Lingen; Sophie von der Heyden; Brent Chiazzari; Bettine Jansen van Vuuren; Luciano B Beheregaray
Journal:  Sci Rep       Date:  2018-05-31       Impact factor: 4.379

10.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

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  3 in total

1.  Genetic structure of urban and non-urban populations differs between two common parid species.

Authors:  Marcin Markowski; Piotr Minias; Mirosława Bańbura; Michał Glądalski; Adam Kaliński; Joanna Skwarska; Jarosław Wawrzyniak; Piotr Zieliński; Jerzy Bańbura
Journal:  Sci Rep       Date:  2021-05-17       Impact factor: 4.379

2.  Absence of genetic isolation across highly fragmented landscape in the ant Temnothorax nigriceps.

Authors:  Jürgen Heinze; Marion Cordonnier; Dominik Felten; Andreas Trindl; Abel Bernadou
Journal:  BMC Ecol Evol       Date:  2022-07-15

3.  Becoming urban - how city life shapes the social structure and genetics of ants.

Authors:  Milan Janda
Journal:  Mol Ecol       Date:  2022-08-13       Impact factor: 6.622

  3 in total

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