Literature DB >> 31970879

Optical coherence tomography image denoising using a generative adversarial network with speckle modulation.

Zhao Dong1,2, Guoyan Liu3,4, Guangming Ni2, Jason Jerwick1,2, Lian Duan1, Chao Zhou1,2,4.   

Abstract

Optical coherence tomography (OCT) is widely used for biomedical imaging and clinical diagnosis. However, speckle noise is a key factor affecting OCT image quality. Here, we developed a custom generative adversarial network (GAN) to denoise OCT images. A speckle-modulating OCT (SM-OCT) was built to generate low speckle images to be used as the ground truth. In total, 210 000 SM-OCT images were used for training and validating the neural network model, which we call SM-GAN. The performance of the SM-GAN method was further demonstrated using online benchmark retinal images, 3D OCT images acquired from human fingers and OCT videos of a beating fruit fly heart. The denoise performance of the SM-GAN model was compared to traditional OCT denoising methods and other state-of-the-art deep learning based denoise networks. We conclude that the SM-GAN model presented here can effectively reduce speckle noise in OCT images and videos while maintaining spatial and temporal resolutions.
© 2020 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  de-noise; deep learning; generative adversarial network; optical coherence tomography

Mesh:

Year:  2020        PMID: 31970879      PMCID: PMC8258757          DOI: 10.1002/jbio.201960135

Source DB:  PubMed          Journal:  J Biophotonics        ISSN: 1864-063X            Impact factor:   3.207


  28 in total

1.  Abnormal foveal morphology in ocular albinism imaged with spectral-domain optical coherence tomography.

Authors:  Gabriel T Chong; Sina Farsiu; Sharon F Freedman; Neeru Sarin; Anjum F Koreishi; Joseph A Izatt; Cynthia A Toth
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Review 2.  QCA, IVUS and OCT in interventional cardiology in 2011.

Authors:  Johan H C Reiber; Shengxian Tu; Joan C Tuinenburg; Gerhard Koning; Johannes P Janssen; Jouke Dijkstra
Journal:  Cardiovasc Diagn Ther       Date:  2011-12

3.  Speckle in optical coherence tomography.

Authors:  J M Schmitt; S H Xiang; K M Yung
Journal:  J Biomed Opt       Date:  1999-01       Impact factor: 3.170

4.  Simultaneous denoising and super-resolution of optical coherence tomography images based on generative adversarial network.

Authors:  Yongqiang Huang; Zexin Lu; Zhimin Shao; Maosong Ran; Jiliu Zhou; Leyuan Fang; Yi Zhang
Journal:  Opt Express       Date:  2019-04-29       Impact factor: 3.894

5.  Speckle noise reduction in optical coherence tomography images based on edge-sensitive cGAN.

Authors:  Yuhui Ma; Xinjian Chen; Weifang Zhu; Xuena Cheng; Dehui Xiang; Fei Shi
Journal:  Biomed Opt Express       Date:  2018-10-02       Impact factor: 3.732

Review 6.  Optical coherence tomography in dermatology: a review.

Authors:  J Welzel
Journal:  Skin Res Technol       Date:  2001-02       Impact factor: 2.365

7.  Speckle-free laser imaging using random laser illumination.

Authors:  Brandon Redding; Michael A Choma; Hui Cao
Journal:  Nat Photonics       Date:  2012       Impact factor: 38.771

8.  Fast acquisition and reconstruction of optical coherence tomography images via sparse representation.

Authors:  Leyuan Fang; Shutao Li; Ryan P McNabb; Qing Nie; Anthony N Kuo; Cynthia A Toth; Joseph A Izatt; Sina Farsiu
Journal:  IEEE Trans Med Imaging       Date:  2013-07-03       Impact factor: 10.048

Review 9.  The Development, Commercialization, and Impact of Optical Coherence Tomography.

Authors:  James Fujimoto; Eric Swanson
Journal:  Invest Ophthalmol Vis Sci       Date:  2016-07-01       Impact factor: 4.799

10.  Ultrahigh speed endoscopic optical coherence tomography using micromotor imaging catheter and VCSEL technology.

Authors:  Tsung-Han Tsai; Benjamin Potsaid; Yuankai K Tao; Vijaysekhar Jayaraman; James Jiang; Peter J S Heim; Martin F Kraus; Chao Zhou; Joachim Hornegger; Hiroshi Mashimo; Alex E Cable; James G Fujimoto
Journal:  Biomed Opt Express       Date:  2013-06-14       Impact factor: 3.732

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  7 in total

1.  Real-time OCT image denoising using a self-fusion neural network.

Authors:  Jose J Rico-Jimenez; Dewei Hu; Eric M Tang; Ipek Oguz; Yuankai K Tao
Journal:  Biomed Opt Express       Date:  2022-02-14       Impact factor: 3.732

Review 2.  Methods and applications of full-field optical coherence tomography: a review.

Authors:  Ling Wang; Rongzhen Fu; Chen Xu; Mingen Xu
Journal:  J Biomed Opt       Date:  2022-05       Impact factor: 3.758

3.  Diagnosing colorectal abnormalities using scattering coefficient maps acquired from optical coherence tomography.

Authors:  Yifeng Zeng; William C Chapman; Yixiao Lin; Shuying Li; Matthew Mutch; Quing Zhu
Journal:  J Biophotonics       Date:  2020-10-22       Impact factor: 3.207

Review 4.  Deep Learning in Biomedical Optics.

Authors:  Lei Tian; Brady Hunt; Muyinatu A Lediju Bell; Ji Yi; Jason T Smith; Marien Ochoa; Xavier Intes; Nicholas J Durr
Journal:  Lasers Surg Med       Date:  2021-05-20

5.  A Joint Model for Macular Edema Analysis in Optical Coherence Tomography Images Based on Image Enhancement and Segmentation.

Authors:  Zhifu Tao; Wenping Zhang; Mudi Yao; Yuanfu Zhong; Yanan Sun; Xiu-Miao Li; Jin Yao; Qin Jiang; Peirong Lu; Zhenhua Wang
Journal:  Biomed Res Int       Date:  2021-02-17       Impact factor: 3.411

6.  Ultrasound image denoising using generative adversarial networks with residual dense connectivity and weighted joint loss.

Authors:  Lun Zhang; Junhua Zhang
Journal:  PeerJ Comput Sci       Date:  2022-02-16

Review 7.  [Data Augmentation Techniques for Deep Learning-Based Medical Image Analyses].

Authors:  Mingyu Kim; Hyun-Jin Bae
Journal:  Taehan Yongsang Uihakhoe Chi       Date:  2020-11-30
  7 in total

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