Literature DB >> 31967544

Human Neocortical Neurosolver (HNN), a new software tool for interpreting the cellular and network origin of human MEG/EEG data.

Samuel A Neymotin1,2, Dylan S Daniels1, Blake Caldwell1, Robert A McDougal3,4, Nicholas T Carnevale3, Mainak Jas5,6, Christopher I Moore1, Michael L Hines3, Matti Hämäläinen5,6, Stephanie R Jones1,7.   

Abstract

Magneto- and electro-encephalography (MEG/EEG) non-invasively record human brain activity with millisecond resolution providing reliable markers of healthy and disease states. Relating these macroscopic signals to underlying cellular- and circuit-level generators is a limitation that constrains using MEG/EEG to reveal novel principles of information processing or to translate findings into new therapies for neuropathology. To address this problem, we built Human Neocortical Neurosolver (HNN, https://hnn.brown.edu) software. HNN has a graphical user interface designed to help researchers and clinicians interpret the neural origins of MEG/EEG. HNN's core is a neocortical circuit model that accounts for biophysical origins of electrical currents generating MEG/EEG. Data can be directly compared to simulated signals and parameters easily manipulated to develop/test hypotheses on a signal's origin. Tutorials teach users to simulate commonly measured signals, including event related potentials and brain rhythms. HNN's ability to associate signals across scales makes it a unique tool for translational neuroscience research.
© 2020, Neymotin et al.

Entities:  

Keywords:  MEG/EEG; brain rhythms; computational modeling; event related potentials; human; human biology; medicine; neuroscience; thalamocortical system; translational neuroscience

Mesh:

Year:  2020        PMID: 31967544      PMCID: PMC7018509          DOI: 10.7554/eLife.51214

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  78 in total

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4.  Decoding the orientation of contrast edges from MEG evoked and induced responses.

Authors:  Dimitrios Pantazis; Mingtong Fang; Sheng Qin; Yalda Mohsenzadeh; Quanzheng Li; Radoslaw Martin Cichy
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Authors:  Catherine E Garabedian; Stephanie R Jones; Michael M Merzenich; Anders Dale; Christopher I Moore
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9.  MNE software for processing MEG and EEG data.

Authors:  Alexandre Gramfort; Martin Luessi; Eric Larson; Denis A Engemann; Daniel Strohmeier; Christian Brodbeck; Lauri Parkkonen; Matti S Hämäläinen
Journal:  Neuroimage       Date:  2013-10-24       Impact factor: 6.556

10.  The Virtual Brain: a simulator of primate brain network dynamics.

Authors:  Paula Sanz Leon; Stuart A Knock; M Marmaduke Woodman; Lia Domide; Jochen Mersmann; Anthony R McIntosh; Viktor Jirsa
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  15 in total

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Authors:  Robert G Law; Sarah Pugliese; Hyeyoung Shin; Danielle D Sliva; Shane Lee; Samuel Neymotin; Christopher Moore; Stephanie R Jones
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2.  Non-zero mean alpha oscillations revealed with computational model and empirical data.

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Journal:  PLoS Comput Biol       Date:  2022-07-08       Impact factor: 4.779

Review 3.  Targeting neural oscillations with transcranial alternating current stimulation.

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Journal:  Brain Res       Date:  2021-04-20       Impact factor: 3.610

4.  Methodological considerations for studying neural oscillations.

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5.  Computation of the electroencephalogram (EEG) from network models of point neurons.

Authors:  Pablo Martínez-Cañada; Torbjørn V Ness; Gaute T Einevoll; Tommaso Fellin; Stefano Panzeri
Journal:  PLoS Comput Biol       Date:  2021-04-02       Impact factor: 4.779

Review 6.  Active Dendrites and Local Field Potentials: Biophysical Mechanisms and Computational Explorations.

Authors:  Manisha Sinha; Rishikesh Narayanan
Journal:  Neuroscience       Date:  2021-09-08       Impact factor: 3.590

7.  FEMfuns: A Volume Conduction Modeling Pipeline that Includes Resistive, Capacitive or Dispersive Tissue and Electrodes.

Authors:  M Vermaas; M C Piastra; T F Oostendorp; N F Ramsey; P H E Tiesinga
Journal:  Neuroinformatics       Date:  2020-10

8.  Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits.

Authors:  Kael Dai; Sergey L Gratiy; Yazan N Billeh; Richard Xu; Binghuang Cai; Nicholas Cain; Atle E Rimehaug; Alexander J Stasik; Gaute T Einevoll; Stefan Mihalas; Christof Koch; Anton Arkhipov
Journal:  PLoS Comput Biol       Date:  2020-11-30       Impact factor: 4.475

9.  A visual encoding model links magnetoencephalography signals to neural synchrony in human cortex.

Authors:  Eline R Kupers; Noah C Benson; Jonathan Winawer
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10.  Models of communication and control for brain networks: distinctions, convergence, and future outlook.

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Journal:  Netw Neurosci       Date:  2020-11-01
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