Literature DB >> 31964843

Worldwide carrier frequency and genetic prevalence of autosomal recessive inherited retinal diseases.

Mor Hanany1, Carlo Rivolta2,3,4, Dror Sharon5.   

Abstract

One of the major questions in human genetics is what percentage of individuals in the general population carry a disease-causing mutation. Based on publicly available information on genotypes from six main world populations, we created a database including data on 276,921 sequence variants, present within 187 genes associated with autosomal recessive (AR) inherited retinal diseases (IRDs). Assessment of these variants revealed that 10,044 were categorized as disease-causing mutations. We developed an algorithm to compute the gene-specific prevalence of disease, as well as the mutational burden in healthy subjects. We found that the genetic prevalence of AR-IRDs corresponds approximately to 1 case in 1,380 individuals, with 5.5 million people expected to be affected worldwide. In addition, we calculated that unaffected carriers of mutations are numerous, ranging from 1 in 2.26 individuals in Europeans to 1 in 3.50 individuals in the Finnish population. Our analysis indicates that about 2.7 billion people worldwide (36% of the population) are healthy carriers of at least one mutation that can cause AR-IRD, a value that is probably the highest across any group of Mendelian conditions in humans.

Entities:  

Keywords:  carrier frequency; disease-causing mutation; genetic prevalence; human genome; inherited retinal diseases

Year:  2020        PMID: 31964843      PMCID: PMC7007541          DOI: 10.1073/pnas.1913179117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

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3.  Application of ACMG criteria to classify variants in the human gene mutation database.

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Journal:  J Hum Genet       Date:  2019-08-26       Impact factor: 3.172

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Journal:  Ophthalmology       Date:  2017-05-27       Impact factor: 12.079

7.  Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

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Journal:  Genet Med       Date:  2015-03-05       Impact factor: 8.822

8.  Expanding the Mutation Spectrum in ABCA4: Sixty Novel Disease Causing Variants and Their Associated Phenotype in a Large French Stargardt Cohort.

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9.  Extremely hypomorphic and severe deep intronic variants in the ABCA4 locus result in varying Stargardt disease phenotypes.

Authors:  Jana Zernant; Winston Lee; Takayuki Nagasaki; Frederick T Collison; Gerald A Fishman; Mette Bertelsen; Thomas Rosenberg; Peter Gouras; Stephen H Tsang; Rando Allikmets
Journal:  Cold Spring Harb Mol Case Stud       Date:  2018-08-01

10.  Whole Exome Sequencing Reveals Mutations in Known Retinal Disease Genes in 33 out of 68 Israeli Families with Inherited Retinopathies.

Authors:  Avigail Beryozkin; Elia Shevah; Adva Kimchi; Liliana Mizrahi-Meissonnier; Samer Khateb; Rinki Ratnapriya; Csilla H Lazar; Anat Blumenfeld; Tamar Ben-Yosef; Yitzhak Hemo; Jacob Pe'er; Eduard Averbuch; Michal Sagi; Alexis Boleda; Linn Gieser; Abraham Zlotogorski; Tzipora Falik-Zaccai; Ola Alimi-Kasem; Samuel G Jacobson; Itay Chowers; Anand Swaroop; Eyal Banin; Dror Sharon
Journal:  Sci Rep       Date:  2015-08-26       Impact factor: 4.379

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  61 in total

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Journal:  J Allergy Clin Immunol       Date:  2021-05-15       Impact factor: 10.793

4.  Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort.

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5.  Longitudinal Changes in Scotopic and Mesopic Macular Function as Assessed with Microperimetry in Patients With Stargardt Disease: SMART Study Report No. 2.

Authors:  Xiangrong Kong; Mohamed Ibrahim-Ahmed; Millena G Bittencourt; Rupert W Strauss; David G Birch; Artur V Cideciyan; Ann-Margaret Ervin; Alexander Ho; Janet S Sunness; Isabelle S Audo; Michel Michaelides; Eberhart Zrenner; SriniVas Sadda; Michael S Ip; Sheila West; Hendrik P N Scholl
Journal:  Am J Ophthalmol       Date:  2021-10-23       Impact factor: 5.258

6.  Gene therapy reforms photoreceptor structure and restores vision in NPHP5-associated Leber congenital amaurosis.

Authors:  Gustavo D Aguirre; Artur V Cideciyan; Valérie L Dufour; Ana Ripolles-García; Raghavi Sudharsan; Malgorzata Swider; Roman Nikonov; Simone Iwabe; Sanford L Boye; William W Hauswirth; Samuel G Jacobson; William A Beltran
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7.  The prevalence, genetic complexity and population-specific founder effects of human autosomal recessive disorders.

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8.  Non-syndromic inherited retinal diseases in Poland: Genes, mutations, and phenotypes.

Authors:  Anna M Tracewska; Beata Kocyła-Karczmarewicz; Agnieszka Rafalska; Joanna Murawska; Joanna Jakubaszko-Jabłónska; Małgorzata Rydzanicz; Piotr Stawiński; Elżbieta Ciara; Beata S Lipska-Ziętkiewicz; Muhammad Imran Khan; Frans P M Cremers; Rafał Płoski; Krystyna H Chrzanowska
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9.  Genetic epidemiology approach to estimating birth incidence and current disease prevalence for rhizomelic chondrodysplasia punctata.

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10.  Perspectives of people with inherited retinal diseases on ocular gene therapy in Australia: protocol for a national survey.

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