Literature DB >> 33946315

Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort.

Yoon-Jeon Kim1, You-Na Kim1, Young-Hee Yoon1, Eul-Ju Seo2, Go-Hun Seo3, Changwon Keum3, Beom-Hee Lee4, Joo-Yong Lee1.   

Abstract

We conducted targeted next-generation sequencing (TGS) and/or whole exome sequencing (WES) to assess the genetic profiles of clinically suspected retinitis pigmentosa (RP) in the Korean population. A cohort of 279 unrelated Korean patients with clinically diagnosed RP and available family members underwent molecular analyses using TGS consisting of 88 RP-causing genes and/or WES with clinical variant interpretation. The combined genetic tests (TGS and/or WES) found a mutation in the 44 RP-causing genes and seven inherited retinal disease (IRD)-causing genes, and the total mutation detection rate was 57%. The mutation detection rate was higher in patients who experienced visual deterioration at a younger age (75.4%, age of symptom onset under 10 years) and who had a family history of RP (70.7%). The most common causative genes were EYS (8.2%), USH2A (6.8%), and PDE6B (4.7%), but mutations were dispersed among the 51 RP/IRD genes generally. Meanwhile, the PDE6B mutation was the most common in patients experiencing initial symptoms in their first decade, EYS in their second to third decades, and USH2A in their fifth decades and older. Of note, WES revealed some unexpected genotypes: ABCC6, CHM, CYP4V2, RS1, TGFBI, VPS13B, and WDR19, which were verified by ophthalmological re-phenotyping.

Entities:  

Keywords:  inherited retinal diseases; retinitis pigmentosa; targeted next-generation sequencing; whole exome sequencing

Year:  2021        PMID: 33946315     DOI: 10.3390/genes12050675

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  38 in total

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Authors:  Isabelle Audo; Olivier M Vanakker; Alaric Smith; Bart P Leroy; Anthony G Robson; Sharon A Jenkins; Paul J Coucke; Alan C Bird; Anne De Paepe; Graham E Holder; Andrew R Webster
Journal:  Invest Ophthalmol Vis Sci       Date:  2007-09       Impact factor: 4.799

2.  Syphilitic posterior uveitis: correlative findings and significance.

Authors:  L D Ormerod; J E Puklin; J D Sobel
Journal:  Clin Infect Dis       Date:  2001-05-21       Impact factor: 9.079

3.  Comprehensive molecular diagnosis of a large cohort of Japanese retinitis pigmentosa and Usher syndrome patients by next-generation sequencing.

Authors:  Maho Oishi; Akio Oishi; Norimoto Gotoh; Ken Ogino; Koichiro Higasa; Kei Iida; Yukiko Makiyama; Satoshi Morooka; Fumihiko Matsuda; Nagahisa Yoshimura
Journal:  Invest Ophthalmol Vis Sci       Date:  2014-10-16       Impact factor: 4.799

4.  A map of human genome variation from population-scale sequencing.

Authors:  Gonçalo R Abecasis; David Altshuler; Adam Auton; Lisa D Brooks; Richard M Durbin; Richard A Gibbs; Matt E Hurles; Gil A McVean
Journal:  Nature       Date:  2010-10-28       Impact factor: 49.962

5.  Genotype-phenotype correlation and mutation spectrum in a large cohort of patients with inherited retinal dystrophy revealed by next-generation sequencing.

Authors:  Xiu-Feng Huang; Fang Huang; Kun-Chao Wu; Juan Wu; Jie Chen; Chi-Pui Pang; Fan Lu; Jia Qu; Zi-Bing Jin
Journal:  Genet Med       Date:  2014-11-06       Impact factor: 8.822

6.  Microglia modulation by TGF-β1 protects cones in mouse models of retinal degeneration.

Authors:  Sean K Wang; Yunlu Xue; Constance L Cepko
Journal:  J Clin Invest       Date:  2020-08-03       Impact factor: 19.456

7.  Retinitis Pigmentosa with EYS Mutations Is the Most Prevalent Inherited Retinal Dystrophy in Japanese Populations.

Authors:  Yuuki Arai; Akiko Maeda; Yasuhiko Hirami; Chie Ishigami; Shinji Kosugi; Michiko Mandai; Yasuo Kurimoto; Masayo Takahashi
Journal:  J Ophthalmol       Date:  2015-06-16       Impact factor: 1.909

8.  Next-generation sequencing identifies unexpected genotype-phenotype correlations in patients with retinitis pigmentosa.

Authors:  Johannes Birtel; Martin Gliem; Elisabeth Mangold; Philipp L Müller; Frank G Holz; Christine Neuhaus; Steffen Lenzner; Diana Zahnleiter; Christian Betz; Tobias Eisenberger; Hanno J Bolz; Peter Charbel Issa
Journal:  PLoS One       Date:  2018-12-13       Impact factor: 3.240

9.  Genetic Mutation Profiles in Korean Patients with Inherited Retinal Diseases.

Authors:  Min Seok Kim; Kwangsic Joo; Moon Woo Seong; Man Jin Kim; Kyu Hyung Park; Sung Sup Park; Se Joon Woo
Journal:  J Korean Med Sci       Date:  2019-06-02       Impact factor: 2.153

10.  Absence of TGFβ signaling in retinal microglia induces retinal degeneration and exacerbates choroidal neovascularization.

Authors:  Wenxin Ma; Sean M Silverman; Lian Zhao; Rafael Villasmil; Maria M Campos; Juan Amaral; Wai T Wong
Journal:  Elife       Date:  2019-01-22       Impact factor: 8.140

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  3 in total

1.  The Genetic Landscape of Inherited Retinal Diseases in a Mexican Cohort: Genes, Mutations and Phenotypes.

Authors:  Cristina Villanueva-Mendoza; Miquel Tuson; David Apam-Garduño; Marta de Castro-Miró; Raul Tonda; Jean Remi Trotta; Gemma Marfany; Rebeca Valero; Vianney Cortés-González; Roser Gonzàlez-Duarte
Journal:  Genes (Basel)       Date:  2021-11-19       Impact factor: 4.096

2.  Aberrant Retinal Pigment Epithelial Cells Derived from Induced Pluripotent Stem Cells of a Retinitis Pigmentosa Patient with the PRPF6 Mutation.

Authors:  Yuqin Liang; Feng Tan; Xihao Sun; Zekai Cui; Jianing Gu; Shengru Mao; Hon Fai Chan; Shibo Tang; Jiansu Chen
Journal:  Int J Mol Sci       Date:  2022-08-12       Impact factor: 6.208

3.  Development of a novel knockout model of retinitis pigmentosa using Pde6b-knockout Long-Evans rats.

Authors:  Jee Myung Yang; Bora Kim; Jiehoon Kwak; Min Kyung Lee; Jeong Hoon Kim; In-Jeoung Baek; Young Hoon Sung; Joo Yong Lee
Journal:  Front Med (Lausanne)       Date:  2022-09-21
  3 in total

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