Literature DB >> 31964273

Decomposing information into copying versus transformation.

Artemy Kolchinsky1, Bernat Corominas-Murtra2.   

Abstract

In many real-world systems, information can be transmitted in two qualitatively different ways: by copying or by transformation. Copying occurs when messages are transmitted without modification, e.g. when an offspring receives an unaltered copy of a gene from its parent. Transformation occurs when messages are modified systematically during transmission, e.g. when mutational biases occur during genetic replication. Standard information-theoretic measures do not distinguish these two modes of information transfer, although they may reflect different mechanisms and have different functional consequences. Starting from a few simple axioms, we derive a decomposition of mutual information into the information transmitted by copying versus the information transmitted by transformation. We begin with a decomposition that applies when the source and destination of the channel have the same set of messages and a notion of message identity exists. We then generalize our decomposition to other kinds of channels, which can involve different source and destination sets and broader notions of similarity. In addition, we show that copy information can be interpreted as the minimal work needed by a physical copying process, which is relevant for understanding the physics of replication. We use the proposed decomposition to explore a model of amino acid substitution rates. Our results apply to any system in which the fidelity of copying, rather than simple predictability, is of critical relevance.

Keywords:  copy information; mutual information; replication; thermodynamics of replication

Mesh:

Year:  2020        PMID: 31964273      PMCID: PMC7014805          DOI: 10.1098/rsif.2019.0623

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  32 in total

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Journal:  J Comput Biol       Date:  2002       Impact factor: 1.479

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-13       Impact factor: 11.205

6.  Complexity measures from interaction structures.

Authors:  T Kahle; E Olbrich; J Jost; N Ay
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-02-02

7.  An improved general amino acid replacement matrix.

Authors:  Si Quang Le; Olivier Gascuel
Journal:  Mol Biol Evol       Date:  2008-03-26       Impact factor: 16.240

8.  Unified framework for information integration based on information geometry.

Authors:  Masafumi Oizumi; Naotsugu Tsuchiya; Shun-Ichi Amari
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-06       Impact factor: 11.205

9.  Semantic information, autonomous agency and non-equilibrium statistical physics.

Authors:  Artemy Kolchinsky; David H Wolpert
Journal:  Interface Focus       Date:  2018-10-19       Impact factor: 3.906

10.  The evolution of language.

Authors:  M A Nowak; D C Krakauer
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-06       Impact factor: 11.205

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  1 in total

1.  Direct and Indirect Effects-An Information Theoretic Perspective.

Authors:  Gabriel Schamberg; William Chapman; Shang-Ping Xie; Todd P Coleman
Journal:  Entropy (Basel)       Date:  2020-07-31       Impact factor: 2.524

  1 in total

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