Literature DB >> 31960224

Boosting the resolution of low-field [Formula: see text] relaxation experiments on intrinsically disordered proteins with triple-resonance NMR.

Zuzana Jaseňáková1, Vojtěch Zapletal1, Petr Padrta2, Milan Zachrdla3, Nicolas Bolik-Coulon3, Thorsten Marquardsen4, Jean-Max Tyburn5, Lukáš Žídek1, Fabien Ferrage6, Pavel Kadeřávek7.   

Abstract

Improving our understanding of nanosecond motions in disordered proteins requires the enhanced sampling of the spectral density function obtained from relaxation at low magnetic fields. High-resolution relaxometry and two-field NMR measurements of relaxation have, so far, only been based on the recording of one- or two-dimensional spectra, which provide insufficient resolution for challenging disordered proteins. Here, we introduce a 3D-HNCO-based two-field NMR experiment for measurements of protein backbone [Formula: see text] amide longitudinal relaxation rates. The experiment provides accurate longitudinal relaxation rates at low field (0.33 T in our case) preserving the resolution and sensitivity typical for high-field NMR spectroscopy. Radiofrequency pulses applied on six different radiofrequency channels are used to manipulate the spin system at both fields. The experiment was demonstrated on the C-terminal domain of [Formula: see text] subunit of RNA polymerase from Bacillus subtilis, a protein with highly repetitive amino-acid sequence and very low dispersion of backbone chemical shifts.

Entities:  

Keywords:  Dynamics; High-resolution relaxometry; Intrinsically disordered proteins; Non-uniform sampling; Nuclear magnetic resonance; Relaxation

Year:  2020        PMID: 31960224     DOI: 10.1007/s10858-019-00298-6

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  31 in total

1.  Protein dynamics by ¹⁵N nuclear magnetic relaxation.

Authors:  Fabien Ferrage
Journal:  Methods Mol Biol       Date:  2012

2.  Steady state in magnetic resonance pulse experiments.

Authors: 
Journal:  Phys Rev Lett       Date:  1992-11-23       Impact factor: 9.161

3.  Accurate determination of rates from non-uniformly sampled relaxation data.

Authors:  Matthew A Stetz; A Joshua Wand
Journal:  J Biomol NMR       Date:  2016-07-08       Impact factor: 2.835

4.  Structural study of the partially disordered full-length δ subunit of RNA polymerase from Bacillus subtilis.

Authors:  Veronika Papoušková; Pavel Kadeřávek; Olga Otrusinová; Alžbeta Rabatinová; Hana ŠSanderová; Jiří Nováček; Libor Krásný; Vladimír Sklenář; Lukáš Žídek
Journal:  Chembiochem       Date:  2013-07-18       Impact factor: 3.164

5.  Identification of Dynamic Modes in an Intrinsically Disordered Protein Using Temperature-Dependent NMR Relaxation.

Authors:  Anton Abyzov; Nicola Salvi; Robert Schneider; Damien Maurin; Rob W H Ruigrok; Malene Ringkjøbing Jensen; Martin Blackledge
Journal:  J Am Chem Soc       Date:  2016-05-06       Impact factor: 15.419

6.  Triple resonance ¹⁵Ν NMR relaxation experiments for studies of intrinsically disordered proteins.

Authors:  Pavel Srb; Jiří Nováček; Pavel Kadeřávek; Alžbeta Rabatinová; Libor Krásný; Jitka Žídková; Janette Bobálová; Vladimír Sklenář; Lukáš Žídek
Journal:  J Biomol NMR       Date:  2017-10-25       Impact factor: 2.835

7.  Determination of Protein ps-ns Motions by High-Resolution Relaxometry.

Authors:  Samuel F Cousin; Pavel Kadeřávek; Nicolas Bolik-Coulon; Fabien Ferrage
Journal:  Methods Mol Biol       Date:  2018

8.  Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data.

Authors:  Jinfa Ying; Frank Delaglio; Dennis A Torchia; Ad Bax
Journal:  J Biomol NMR       Date:  2016-11-19       Impact factor: 2.835

9.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

10.  Distribution of Pico- and Nanosecond Motions in Disordered Proteins from Nuclear Spin Relaxation.

Authors:  Shahid N Khan; Cyril Charlier; Rafal Augustyniak; Nicola Salvi; Victoire Déjean; Geoffrey Bodenhausen; Olivier Lequin; Philippe Pelupessy; Fabien Ferrage
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.