Literature DB >> 22167673

Protein dynamics by ¹⁵N nuclear magnetic relaxation.

Fabien Ferrage1.   

Abstract

Nitrogen-15 relaxation is the most ubiquitous source of information about protein (backbone) dynamics used by NMR spectroscopists. It provides the general characteristics of hydrodynamics as well as internal motions on subnanosecond, micro- and millisecond timescales of a biomolecule. Here, we present a full protocol to perform and analyze a series of experiments to measure the (15)N longitudinal relaxation rate, the (15)N transverse relaxation rate under an echo train or a single echo, the (15)N-(1)H dipolar cross-relaxation rate, as well as the longitudinal and transverse cross-relaxation rates due to the cross-correlation of the nitrogen-15 chemical shift anisotropy and the dipolar coupling with the adjacent proton. These rates can be employed to carry out model-free analyses and can be used to quantify accurately the contribution of chemical exchange to transverse relaxation.

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Year:  2012        PMID: 22167673     DOI: 10.1007/978-1-61779-480-3_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

1.  Triple resonance ¹⁵Ν NMR relaxation experiments for studies of intrinsically disordered proteins.

Authors:  Pavel Srb; Jiří Nováček; Pavel Kadeřávek; Alžbeta Rabatinová; Libor Krásný; Jitka Žídková; Janette Bobálová; Vladimír Sklenář; Lukáš Žídek
Journal:  J Biomol NMR       Date:  2017-10-25       Impact factor: 2.835

2.  Boosting the resolution of low-field [Formula: see text] relaxation experiments on intrinsically disordered proteins with triple-resonance NMR.

Authors:  Zuzana Jaseňáková; Vojtěch Zapletal; Petr Padrta; Milan Zachrdla; Nicolas Bolik-Coulon; Thorsten Marquardsen; Jean-Max Tyburn; Lukáš Žídek; Fabien Ferrage; Pavel Kadeřávek
Journal:  J Biomol NMR       Date:  2020-01-20       Impact factor: 2.835

3.  Functionally specific binding regions of microtubule-associated protein 2c exhibit distinct conformations and dynamics.

Authors:  Kateřina Melková; Vojtěch Zapletal; Séverine Jansen; Erik Nomilner; Milan Zachrdla; Jozef Hritz; Jiří Nováček; Markus Zweckstetter; Malene R Jensen; Martin Blackledge; Lukáš Žídek
Journal:  J Biol Chem       Date:  2018-06-20       Impact factor: 5.157

4.  RNA modifications stabilize the tertiary structure of tRNAfMet by locally increasing conformational dynamics.

Authors:  Thomas Biedenbänder; Vanessa de Jesus; Martina Schmidt-Dengler; Mark Helm; Björn Corzilius; Boris Fürtig
Journal:  Nucleic Acids Res       Date:  2022-02-28       Impact factor: 16.971

5.  Model of abasic site DNA cross-link repair; from the architecture of NEIL3 DNA binding domains to the X-structure model.

Authors:  Andrea Huskova; Dhurvas Chandrasekaran Dinesh; Pavel Srb; Evzen Boura; Vaclav Veverka; Jan Silhan
Journal:  Nucleic Acids Res       Date:  2022-10-14       Impact factor: 19.160

6.  Distribution of Pico- and Nanosecond Motions in Disordered Proteins from Nuclear Spin Relaxation.

Authors:  Shahid N Khan; Cyril Charlier; Rafal Augustyniak; Nicola Salvi; Victoire Déjean; Geoffrey Bodenhausen; Olivier Lequin; Philippe Pelupessy; Fabien Ferrage
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

  6 in total

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