Literature DB >> 31957870

Development of a System for Postmarketing Population Pharmacokinetic and Pharmacodynamic Studies Using Real-World Data From Electronic Health Records.

Leena Choi1, Cole Beck1, Elizabeth McNeer1, Hannah L Weeks1, Michael L Williams1, Nathan T James1, Xinnan Niu2, Bassel W Abou-Khalil3, Kelly A Birdwell4, Dan M Roden2,4,5, C Michael Stein4,5, Cosmin A Bejan2, Joshua C Denny2,4, Sara L Van Driest4,6.   

Abstract

Postmarketing population pharmacokinetic (PK) and pharmacodynamic (PD) studies can be useful to capture patient characteristics affecting PK or PD in real-world settings. These studies require longitudinally measured dose, outcomes, and covariates in large numbers of patients; however, prospective data collection is cost-prohibitive. Electronic health records (EHRs) can be an excellent source for such data, but there are challenges, including accurate ascertainment of drug dose. We developed a standardized system to prepare datasets from EHRs for population PK/PD studies. Our system handles a variety of tasks involving data extraction from clinical text using a natural language processing algorithm, data processing, and data building. Applying this system, we performed a fentanyl population PK analysis, resulting in comparable parameter estimates to a prior study. This new system makes the EHR data extraction and preparation process more efficient and accurate and provides a powerful tool to facilitate postmarketing population PK/PD studies using information available in EHRs.
© 2020 The Authors Clinical Pharmacology & Therapeutics © 2020 American Society for Clinical Pharmacology and Therapeutics.

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Year:  2020        PMID: 31957870      PMCID: PMC7093250          DOI: 10.1002/cpt.1787

Source DB:  PubMed          Journal:  Clin Pharmacol Ther        ISSN: 0009-9236            Impact factor:   6.875


  20 in total

1.  Population modelling in drug development.

Authors:  L Sheiner; J Wakefield
Journal:  Stat Methods Med Res       Date:  1999-09       Impact factor: 3.021

2.  Dosing equation for tacrolimus using genetic variants and clinical factors.

Authors:  Chaitali Passey; Angela K Birnbaum; Richard C Brundage; William S Oetting; Ajay K Israni; Pamala A Jacobson
Journal:  Br J Clin Pharmacol       Date:  2011-12       Impact factor: 4.335

3.  PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability.

Authors:  Jacqueline C Kirby; Peter Speltz; Luke V Rasmussen; Melissa Basford; Omri Gottesman; Peggy L Peissig; Jennifer A Pacheco; Gerard Tromp; Jyotishman Pathak; David S Carrell; Stephen B Ellis; Todd Lingren; Will K Thompson; Guergana Savova; Jonathan Haines; Dan M Roden; Paul A Harris; Joshua C Denny
Journal:  J Am Med Inform Assoc       Date:  2016-03-28       Impact factor: 4.497

4.  The use of a DNA biobank linked to electronic medical records to characterize pharmacogenomic predictors of tacrolimus dose requirement in kidney transplant recipients.

Authors:  Kelly A Birdwell; Ben Grady; Leena Choi; Hua Xu; Aihua Bian; Josh C Denny; Min Jiang; Gayle Vranic; Melissa Basford; James D Cowan; Danielle M Richardson; Melanie P Robinson; Talat Alp Ikizler; Marylyn D Ritchie; Charles Michael Stein; David W Haas
Journal:  Pharmacogenet Genomics       Date:  2012-01       Impact factor: 2.089

5.  Predicting clopidogrel response using DNA samples linked to an electronic health record.

Authors:  J T Delaney; A H Ramirez; E Bowton; J M Pulley; M A Basford; J S Schildcrout; Y Shi; R Zink; M Oetjens; H Xu; J H Cleator; E Jahangir; M D Ritchie; D R Masys; D M Roden; D C Crawford; J C Denny
Journal:  Clin Pharmacol Ther       Date:  2011-12-21       Impact factor: 6.875

6.  Pragmatic pharmacology: population pharmacokinetic analysis of fentanyl using remnant samples from children after cardiac surgery.

Authors:  Sara L Van Driest; Matthew D Marshall; Brian Hachey; Cole Beck; Kim Crum; Jill Owen; Andrew H Smith; Prince J Kannankeril; Alison Woodworth; Richard M Caprioli; Leena Choi
Journal:  Br J Clin Pharmacol       Date:  2016-04-15       Impact factor: 4.335

7.  PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene-disease associations.

Authors:  Joshua C Denny; Marylyn D Ritchie; Melissa A Basford; Jill M Pulley; Lisa Bastarache; Kristin Brown-Gentry; Deede Wang; Dan R Masys; Dan M Roden; Dana C Crawford
Journal:  Bioinformatics       Date:  2010-03-24       Impact factor: 6.937

8.  Real-World Data for Pediatric Pharmacometrics: Can We Upcycle Clinical Data for Research Use?

Authors:  Sara L Van Driest; Leena Choi
Journal:  Clin Pharmacol Ther       Date:  2019-04-03       Impact factor: 6.875

9.  A genome-wide association study identifies variants in KCNIP4 associated with ACE inhibitor-induced cough.

Authors:  J D Mosley; C M Shaffer; S L Van Driest; P E Weeke; Q S Wells; J H Karnes; D R Velez Edwards; W-Q Wei; P L Teixeira; L Bastarache; D C Crawford; R Li; T A Manolio; E P Bottinger; C A McCarty; J G Linneman; M H Brilliant; J A Pacheco; W Thompson; R L Chisholm; G P Jarvik; D R Crosslin; D S Carrell; E Baldwin; J Ralston; E B Larson; J Grafton; A Scrol; H Jouni; I J Kullo; G Tromp; K M Borthwick; H Kuivaniemi; D J Carey; M D Ritchie; Y Bradford; S S Verma; C G Chute; A Veluchamy; M K Siddiqui; C N A Palmer; A Doney; S H MahmoudPour; A H Maitland-van der Zee; A D Morris; J C Denny; D M Roden
Journal:  Pharmacogenomics J       Date:  2015-07-14       Impact factor: 3.550

10.  Electronic Health Records and Pharmacokinetic Modeling to Assess the Relationship between Ampicillin Exposure and Seizure Risk in Neonates.

Authors:  Christoph P Hornik; Daniel K Benjamin; P Brian Smith; Michael J Pencina; Adriana H Tremoulet; Edmund V Capparelli; Jessica E Ericson; Reese H Clark; Michael Cohen-Wolkowiez
Journal:  J Pediatr       Date:  2016-08-10       Impact factor: 6.314

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  12 in total

Review 1.  Contemporary use of real-world data for clinical trial conduct in the United States: a scoping review.

Authors:  James R Rogers; Junghwan Lee; Ziheng Zhou; Ying Kuen Cheung; George Hripcsak; Chunhua Weng
Journal:  J Am Med Inform Assoc       Date:  2021-01-15       Impact factor: 4.497

2.  Sensitivity of estimated tacrolimus population pharmacokinetic profile to assumed dose timing and absorption in real-world data and simulated data.

Authors:  Michael L Williams; Hannah L Weeks; Cole Beck; Kelly A Birdwell; Sara L Van Driest; Leena Choi
Journal:  Br J Clin Pharmacol       Date:  2022-01-27       Impact factor: 3.716

3.  Building longitudinal medication dose data using medication information extracted from clinical notes in electronic health records.

Authors:  Elizabeth McNeer; Cole Beck; Hannah L Weeks; Michael L Williams; Nathan T James; Cosmin A Bejan; Leena Choi
Journal:  J Am Med Inform Assoc       Date:  2021-03-18       Impact factor: 7.942

4.  Effect of CYP3A5 and CYP3A4 Genetic Variants on Fentanyl Pharmacokinetics in a Pediatric Population.

Authors:  Michael L Williams; Prince J Kannankeril; Joseph H Breeyear; Todd L Edwards; Sara L Van Driest; Leena Choi
Journal:  Clin Pharmacol Ther       Date:  2022-01-03       Impact factor: 6.903

5.  Population pharmacokinetic analysis of dexmedetomidine in children using real-world data from electronic health records and remnant specimens.

Authors:  Nathan T James; Joseph H Breeyear; Richard Caprioli; Todd Edwards; Brian Hachey; Prince J Kannankeril; Jacob M Keaton; Matthew D Marshall; Sara L Van Driest; Leena Choi
Journal:  Br J Clin Pharmacol       Date:  2022-01-28       Impact factor: 3.716

6.  DrugWAS: Leveraging drug-wide association studies to facilitate drug repurposing for COVID-19.

Authors:  Cosmin A Bejan; Katherine N Cahill; Patrick J Staso; Leen Choi; Josh F Peterson; Elizabeth Jane Phillips
Journal:  medRxiv       Date:  2021-02-08

Review 7.  Data Integration Challenges for Machine Learning in Precision Medicine.

Authors:  Mireya Martínez-García; Enrique Hernández-Lemus
Journal:  Front Med (Lausanne)       Date:  2022-01-25

8.  Using Electronic Health Records for Personalized Dosing of Intravenous Vancomycin in Critically Ill Neonates: Model and Web-Based Interface Development Study.

Authors:  Cheuk Hin Twinny Chow; Yuen Shun Janice Li; Pok Him Tom Leung; Long Yin Brian Chan; Ka Ho Matthew Hui; Hugh Simon Lam; Chui Ping Lee; Celeste Lom Ying Ewig; Yin Ting Cheung; Tai Ning Teddy Lam
Journal:  JMIR Med Inform       Date:  2022-01-31

Review 9.  Alternative strategies in cardiac preclinical research and new clinical trial formats.

Authors:  Fabian Philipp Kreutzer; Anna Meinecke; Kevin Schmidt; Jan Fiedler; Thomas Thum
Journal:  Cardiovasc Res       Date:  2022-02-21       Impact factor: 10.787

10.  DrugWAS: Drug-wide Association Studies for COVID-19 Drug Repurposing.

Authors:  Cosmin A Bejan; Katherine N Cahill; Patrick J Staso; Leena Choi; Josh F Peterson; Elizabeth J Phillips
Journal:  Clin Pharmacol Ther       Date:  2021-08-10       Impact factor: 6.903

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