Literature DB >> 31952779

Evolving Significance of Tumor-Normal Sequencing in Cancer Care.

Diana Mandelker1, Ozge Ceyhan-Birsoy2.   

Abstract

Molecular tests assist at various stages of cancer patient management, including providing diagnosis, predicting prognosis, identifying therapeutic targets, and determining hereditary cancer risk. The current testing paradigm involves germline testing in a subset of patients determined to be at high risk for having a hereditary cancer syndrome, and tumor-only sequencing for treatment decisions in advanced cancer patients. A major limitation of tumor-only sequencing is its inability to distinguish germline versus somatic mutations. Tumor-normal sequencing has emerged as a comprehensive analysis for both hereditary cancer predisposition and somatic profiling. Here, we review recent studies involving tumor-normal sequencing, discuss its benefits in clinical care, challenges for its implementation, and novel insights it has provided regarding tumor biology and germline contribution to cancer.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  hereditary cancer predisposition; tumor sequencing; tumor-normal sequencing

Mesh:

Substances:

Year:  2019        PMID: 31952779      PMCID: PMC8923150          DOI: 10.1016/j.trecan.2019.11.006

Source DB:  PubMed          Journal:  Trends Cancer        ISSN: 2405-8025


  53 in total

1.  Personalized genomic analyses for cancer mutation discovery and interpretation.

Authors:  Siân Jones; Valsamo Anagnostou; Karli Lytle; Sonya Parpart-Li; Monica Nesselbush; David R Riley; Manish Shukla; Bryan Chesnick; Maura Kadan; Eniko Papp; Kevin G Galens; Derek Murphy; Theresa Zhang; Lisa Kann; Mark Sausen; Samuel V Angiuoli; Luis A Diaz; Victor E Velculescu
Journal:  Sci Transl Med       Date:  2015-04-15       Impact factor: 17.956

2.  NCCN Guidelines Insights: Genetic/Familial High-Risk Assessment: Breast and Ovarian, Version 2.2017.

Authors:  Mary B Daly; Robert Pilarski; Michael Berry; Saundra S Buys; Meagan Farmer; Susan Friedman; Judy E Garber; Noah D Kauff; Seema Khan; Catherine Klein; Wendy Kohlmann; Allison Kurian; Jennifer K Litton; Lisa Madlensky; Sofia D Merajver; Kenneth Offit; Tuya Pal; Gwen Reiser; Kristen Mahoney Shannon; Elizabeth Swisher; Shaveta Vinayak; Nicoleta C Voian; Jeffrey N Weitzel; Myra J Wick; Georgia L Wiesner; Mary Dwyer; Susan Darlow
Journal:  J Natl Compr Canc Netw       Date:  2017-01       Impact factor: 11.908

3.  Integrating somatic variant data and biomarkers for germline variant classification in cancer predisposition genes.

Authors:  Michael F Walsh; Deborah I Ritter; Chimene Kesserwan; Dmitriy Sonkin; Debyani Chakravarty; Elizabeth Chao; Rajarshi Ghosh; Yelena Kemel; Gang Wu; Kristy Lee; Shashikant Kulkarni; Dale Hedges; Diana Mandelker; Ozge Ceyhan-Birsoy; Minjie Luo; Michael Drazer; Liying Zhang; Kenneth Offit; Sharon E Plon
Journal:  Hum Mutat       Date:  2018-11       Impact factor: 4.878

4.  Germline Analysis from Tumor-Germline Sequencing Dyads to Identify Clinically Actionable Secondary Findings.

Authors:  Bryce A Seifert; Julianne M O'Daniel; Krunal Amin; Daniel S Marchuk; Nirali M Patel; Joel S Parker; Alan P Hoyle; Lisle E Mose; Andrew Marron; Michele C Hayward; Christopher Bizon; Kirk C Wilhelmsen; James P Evans; H Shelton Earp; Norman E Sharpless; D Neil Hayes; Jonathan S Berg
Journal:  Clin Cancer Res       Date:  2016-04-15       Impact factor: 12.531

5.  Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence.

Authors:  Giulio Genovese; Anna K Kähler; Robert E Handsaker; Johan Lindberg; Samuel A Rose; Samuel F Bakhoum; Kimberly Chambert; Eran Mick; Benjamin M Neale; Menachem Fromer; Shaun M Purcell; Oscar Svantesson; Mikael Landén; Martin Höglund; Sören Lehmann; Stacey B Gabriel; Jennifer L Moran; Eric S Lander; Patrick F Sullivan; Pamela Sklar; Henrik Grönberg; Christina M Hultman; Steven A McCarroll
Journal:  N Engl J Med       Date:  2014-11-26       Impact factor: 91.245

Review 6.  Hereditary cancer predisposition syndromes.

Authors:  Judy E Garber; Kenneth Offit
Journal:  J Clin Oncol       Date:  2005-01-10       Impact factor: 44.544

7.  American Society of Clinical Oncology Policy Statement Update: Genetic and Genomic Testing for Cancer Susceptibility.

Authors:  Mark E Robson; Angela R Bradbury; Banu Arun; Susan M Domchek; James M Ford; Heather L Hampel; Stephen M Lipkin; Sapna Syngal; Dana S Wollins; Noralane M Lindor
Journal:  J Clin Oncol       Date:  2015-08-31       Impact factor: 44.544

8.  Patterns and functional implications of rare germline variants across 12 cancer types.

Authors:  Charles Lu; Mingchao Xie; Michael C Wendl; Jiayin Wang; Michael D McLellan; Mark D M Leiserson; Kuan-Lin Huang; Matthew A Wyczalkowski; Reyka Jayasinghe; Tapahsama Banerjee; Jie Ning; Piyush Tripathi; Qunyuan Zhang; Beifang Niu; Kai Ye; Heather K Schmidt; Robert S Fulton; Joshua F McMichael; Prag Batra; Cyriac Kandoth; Maheetha Bharadwaj; Daniel C Koboldt; Christopher A Miller; Krishna L Kanchi; James M Eldred; David E Larson; John S Welch; Ming You; Bradley A Ozenberger; Ramaswamy Govindan; Matthew J Walter; Matthew J Ellis; Elaine R Mardis; Timothy A Graubert; John F Dipersio; Timothy J Ley; Richard K Wilson; Paul J Goodfellow; Benjamin J Raphael; Feng Chen; Kimberly J Johnson; Jeffrey D Parvin; Li Ding
Journal:  Nat Commun       Date:  2015-12-22       Impact factor: 14.919

9.  Evaluating somatic tumor mutation detection without matched normal samples.

Authors:  Jamie K Teer; Yonghong Zhang; Lu Chen; Eric A Welsh; W Douglas Cress; Steven A Eschrich; Anders E Berglund
Journal:  Hum Genomics       Date:  2017-09-04       Impact factor: 4.639

10.  A practice guideline from the American College of Medical Genetics and Genomics and the National Society of Genetic Counselors: referral indications for cancer predisposition assessment.

Authors:  Heather Hampel; Robin L Bennett; Adam Buchanan; Rachel Pearlman; Georgia L Wiesner
Journal:  Genet Med       Date:  2014-11-13       Impact factor: 8.822

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  4 in total

1.  Multiple Primary Cancers in Patients Undergoing Tumor-Normal Sequencing Define Novel Associations.

Authors:  Ying L Liu; Karen A Cadoo; Semanti Mukherjee; Aliya Khurram; Kaitlyn Tkachuk; Yelena Kemel; Anna Maio; Sami Belhadj; Maria I Carlo; Alicia Latham; Michael F Walsh; Marianne E Dubard-Gault; Yuhan Wang; A Rose Brannon; Erin Salo-Mullen; Margaret Sheehan; Elise Fiala; Bryan Devolder; Sita Dandiker; Diana Mandelker; Ahmet Zehir; Marc Ladanyi; Michael F Berger; David B Solit; Chaitanya Bandlamudi; Vignesh Ravichandran; Dean F Bajorin; Zsofia K Stadler; Mark E Robson; Joseph Vijai; Venkatraman Seshan; Kenneth Offit
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2021-11-22       Impact factor: 4.090

2.  Cancer-Causative Mutations Occurring in Early Embryogenesis.

Authors:  Fresia Pareja; Ryan N Ptashkin; David N Brown; Fatemeh Derakhshan; Pier Selenica; Edaise M da Silva; Andrea M Gazzo; Arnaud Da Cruz Paula; Kelsey Breen; Ronglai Shen; Antonio Marra; Ahmet Zehir; Ryma Benayed; Michael F Berger; Ozge Ceyhan-Birsoy; Sowmya Jairam; Margaret Sheehan; Utsav Patel; Yelena Kemel; Jacklyn Casanova-Murphy; Christopher J Schwartz; Mahsa Vahdatinia; Elizabeth Comen; Laetitia Borsu; Xin Pei; Nadeem Riaz; David H Abramson; Britta Weigelt; Michael F Walsh; Anna-Katerina Hadjantonakis; Marc Ladanyi; Kenneth Offit; Zsofia K Stadler; Mark E Robson; Jorge S Reis-Filho; Diana Mandelker
Journal:  Cancer Discov       Date:  2022-04-01       Impact factor: 38.272

Review 3.  Discovery through clinical sequencing in oncology.

Authors:  Mark T A Donoghue; Alison M Schram; David M Hyman; Barry S Taylor
Journal:  Nat Cancer       Date:  2020-08-10

4.  Diagnostic yield and clinical relevance of expanded genetic testing for cancer patients.

Authors:  Ozge Ceyhan-Birsoy; Gowtham Jayakumaran; Yelena Kemel; Maksym Misyura; Umut Aypar; Sowmya Jairam; Ciyu Yang; Yirong Li; Nikita Mehta; Anna Maio; Angela Arnold; Erin Salo-Mullen; Margaret Sheehan; Aijazuddin Syed; Michael Walsh; Maria Carlo; Mark Robson; Kenneth Offit; Marc Ladanyi; Jorge S Reis-Filho; Zsofia K Stadler; Liying Zhang; Alicia Latham; Ahmet Zehir; Diana Mandelker
Journal:  Genome Med       Date:  2022-08-15       Impact factor: 15.266

  4 in total

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