Literature DB >> 31942640

Omics for the future in asthma.

Mahmoud I Abdel-Aziz1,2, Anne H Neerincx1, Susanne J Vijverberg1, Aletta D Kraneveld3,4, Anke H Maitland-van der Zee5,6.   

Abstract

Asthma is a common, complex, multifaceted disease. It comprises multiple phenotypes, which might benefit from treatment with different types of innovative targeted therapies. Refining these phenotypes and understanding their underlying biological structure would help to apply precision medicine approaches. Using different omics methods, such as (epi)genomics, transcriptomics, proteomics, metabolomics, microbiomics, and exposomics, allowed to view and investigate asthma from diverse angles. Technological advancement led to a large increase in the application of omics studies in the asthma field. Although the use of omics technologies has reduced the gap between bench to bedside, several design and methodological challenges still need to be tackled before omics can be applied in asthma patient care. Collaborating under a centralized harmonized work frame (such as in consortia, under consistent methodologies) could help worldwide research teams to tackle these challenges. In this review, we discuss the transition of single biomarker research to multi-omics studies. In addition, we deliberate challenges such as the lack of standardization of sampling and analytical methodologies and validation of findings, which comes in between omics and personalized patient care. The future of omics in asthma is encouraging but not completely clear with some unanswered questions, which have not been adequately addressed before. Therefore, we highlight these questions and emphasize on the importance of fulfilling them.

Entities:  

Keywords:  Biomarkers; Challenges; Integration; Omics; Phenotypes; Precision medicine

Year:  2020        PMID: 31942640     DOI: 10.1007/s00281-019-00776-x

Source DB:  PubMed          Journal:  Semin Immunopathol        ISSN: 1863-2297            Impact factor:   9.623


  98 in total

Review 1.  Environmental epigenetics and asthma: current concepts and call for studies.

Authors:  Rachel L Miller; Shuk-Mei Ho
Journal:  Am J Respir Crit Care Med       Date:  2008-01-10       Impact factor: 21.405

2.  A working classification of asthma.

Authors:  F M RACKEMANN
Journal:  Am J Med       Date:  1947-11       Impact factor: 4.965

3.  Perturbation of metabolic pathways mediates the association of air pollutants with asthma and cardiovascular diseases.

Authors:  Ayoung Jeong; Giovanni Fiorito; Pekka Keski-Rahkonen; Medea Imboden; Agneta Kiss; Nivonirina Robinot; Hans Gmuender; Jelle Vlaanderen; Roel Vermeulen; Soterios Kyrtopoulos; Zdenko Herceg; Akram Ghantous; Gianfranco Lovison; Claudia Galassi; Andrea Ranzi; Vittorio Krogh; Sara Grioni; Claudia Agnoli; Carlotta Sacerdote; Nahid Mostafavi; Alessio Naccarati; Augustin Scalbert; Paolo Vineis; Nicole Probst-Hensch
Journal:  Environ Int       Date:  2018-07-07       Impact factor: 9.621

Review 4.  Breathomics in lung disease.

Authors:  Marc Philippe van der Schee; Tamara Paff; Paul Brinkman; Willem Marinus Christiaan van Aalderen; Eric Gerardus Haarman; Peter Jan Sterk
Journal:  Chest       Date:  2015-01       Impact factor: 9.410

5.  Identifying adult asthma phenotypes using a clustering approach.

Authors:  V Siroux; X Basagaña; A Boudier; I Pin; J Garcia-Aymerich; A Vesin; R Slama; D Jarvis; J M Anto; F Kauffmann; J Sunyer
Journal:  Eur Respir J       Date:  2011-01-13       Impact factor: 16.671

Review 6.  The need for precision medicine clinical trials in childhood asthma: rationale and design of the PUFFIN trial.

Authors:  Susanne Jh Vijverberg; Mariëlle W Pijnenburg; Anke M Hövels; Gerard H Koppelman; Anke-Hilse Maitland-van der Zee
Journal:  Pharmacogenomics       Date:  2017-02-22       Impact factor: 2.533

7.  Abnormal histone methylation is responsible for increased vascular endothelial growth factor 165a secretion from airway smooth muscle cells in asthma.

Authors:  Rachel L Clifford; Alison E John; Christopher E Brightling; Alan J Knox
Journal:  J Immunol       Date:  2012-06-11       Impact factor: 5.422

8.  The burden of severe asthma in childhood and adolescence: results from the paediatric U-BIOPRED cohorts.

Authors:  Louise Fleming; Clare Murray; Aruna T Bansal; Simone Hashimoto; Hans Bisgaard; Andrew Bush; Urs Frey; Gunilla Hedlin; Florian Singer; Wim M van Aalderen; Nadja H Vissing; Zaraquiza Zolkipli; Anna Selby; Stephen Fowler; Dominick Shaw; Kian Fan Chung; Ana R Sousa; Scott Wagers; Julie Corfield; Ioannis Pandis; Anthony Rowe; Elena Formaggio; Peter J Sterk; Graham Roberts
Journal:  Eur Respir J       Date:  2015-09-24       Impact factor: 16.671

Review 9.  Protein microarrays for personalized medicine.

Authors:  Xiaobo Yu; Nicole Schneiderhan-Marra; Thomas O Joos
Journal:  Clin Chem       Date:  2010-01-14       Impact factor: 8.327

10.  Combining genomewide association study and lung eQTL analysis provides evidence for novel genes associated with asthma.

Authors:  M A Nieuwenhuis; M Siedlinski; M van den Berge; R Granell; X Li; M Niens; P van der Vlies; J Altmüller; P Nürnberg; M Kerkhof; O C van Schayck; R A Riemersma; T van der Molen; J G de Monchy; Y Bossé; A Sandford; C A Bruijnzeel-Koomen; R Gerth van Wijk; N H Ten Hacken; W Timens; H M Boezen; J Henderson; M Kabesch; J M Vonk; D S Postma; G H Koppelman
Journal:  Allergy       Date:  2016-08-22       Impact factor: 13.146

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  9 in total

Review 1.  Addressing Exposome: An Innovative Approach to Environmental Determinants in Pediatric Respiratory Health.

Authors:  Giuliana Ferrante; Salvatore Fasola; Giovanna Cilluffo; Giorgio Piacentini; Giovanni Viegi; Stefania La Grutta
Journal:  Front Public Health       Date:  2022-06-14

2.  Treatable Mechanisms in Asthma.

Authors:  Mario Cazzola; Josuel Ora; Francesco Cavalli; Paola Rogliani; Maria Gabriella Matera
Journal:  Mol Diagn Ther       Date:  2021-02-11       Impact factor: 4.074

3.  Preface.

Authors:  Bianca Schaub
Journal:  Semin Immunopathol       Date:  2020-02       Impact factor: 9.623

4.  Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0.

Authors:  Espen E Groth; Melanie Weber; Thomas Bahmer; Frauke Pedersen; Anne Kirsten; Daniela Börnigen; Klaus F Rabe; Henrik Watz; Ole Ammerpohl; Torsten Goldmann
Journal:  Respir Res       Date:  2020-10-19

Review 5.  A Multi-Point View of Genetic Factors Affecting Hereditary Transmissibility of Asthma.

Authors:  Aryan Kulkarni; Dr Anupkumar Kediya
Journal:  Cureus       Date:  2022-09-04

6.  A System Pharmacology Multi-Omics Approach toward Uncontrolled Pediatric Asthma.

Authors:  Mahmoud I Abdel-Aziz; Anne H Neerincx; Susanne J H Vijverberg; Simone Hashimoto; Paul Brinkman; Mario Gorenjak; Antoaneta A Toncheva; Susanne Harner; Susanne Brandstetter; Christine Wolff; Javier Perez-Garcia; Anna M Hedman; Catarina Almqvist; Paula Corcuera-Elosegui; Javier Korta-Murua; Olaia Sardón-Prado; Maria Pino-Yanes; Uroš Potočnik; Michael Kabesch; Aletta D Kraneveld; Anke H Maitland-van der Zee
Journal:  J Pers Med       Date:  2021-05-28

Review 7.  Potential Metabolic Biomarkers in Adult Asthmatics.

Authors:  Soyoon Sim; Youngwoo Choi; Hae-Sim Park
Journal:  Metabolites       Date:  2021-06-30

Review 8.  Microbiome Research and Multi-Omics Integration for Personalized Medicine in Asthma.

Authors:  Marianthi Logotheti; Panagiotis Agioutantis; Paraskevi Katsaounou; Heleni Loutrari
Journal:  J Pers Med       Date:  2021-12-05

Review 9.  Multi-Omics Profiling Approach to Asthma: An Evolving Paradigm.

Authors:  Yadu Gautam; Elisabet Johansson; Tesfaye B Mersha
Journal:  J Pers Med       Date:  2022-01-07
  9 in total

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