| Literature DB >> 31941552 |
Hibiki Odanaka1,2, Takashi Obama2, Naoko Sawada2, Marika Sugano1, Hiroyuki Itabe3, Matsuo Yamamoto1.
Abstract
BACKGROUND: The pellicle, the acellular organic material deposited on the surface of tooth enamel, has been thought to be derived from saliva. In this study, protein compositions of the pellicle, gingival crevicular fluid, and saliva collected from healthy adults were compared to elucidate the origin of pellicle proteins.Entities:
Keywords: Alpha-amylase; Cystatin; Gingival crevicular fluid; Isobaric tag labeling; Pellicle; Proteome; Saliva; Serotransferrin
Mesh:
Substances:
Year: 2020 PMID: 31941552 PMCID: PMC6964095 DOI: 10.1186/s40659-020-0271-2
Source DB: PubMed Journal: Biol Res ISSN: 0716-9760 Impact factor: 5.612
Fig. 1A schematic illustration of analyses performed in this study. Six healthy volunteers were recruited. A set of four samples (pellicle, GCF, two saliva samples from parotid and mixed glands) was collected from the same subject. These samples were analyzed by SDS-PAGE followed by MS and western blot and by iTRAQ quantitative comparison
Fig. 2Schematic illustration of iTRAQ method of proteomic relative quantitation. a Pretreatment of the samples before LC–MS/MS analysis. A set of four samples from the same subject (5 μg each) was treated with dithiothreitol and iodoacetamide to cleave disulfide bonds followed by tryptic digestion. Then, amino termini of the peptides were labeled with either one of iTRAQ reagents 114, 115, 116 or 117. The iTARQ reagents have a same molecular mass but they produce isobaric tag moieties with different masses when cleaved during MS/MS analysis. b The iTRAQ-labeled four samples were mixed, and then the mixture was analyzed by LC–MS/MS. In the first MS analysis, the labeled peptides with the same molecular mass are detected as a single peptide. c The instrument subsequently breaks the peptides with high voltage and the fragments were analyzed. In this step, isobaric tags generated were detected separately. The ratio of the tags represents the ratio of the peptides in the four samples. In the same time, fragments of the peptides provide structural information about amino acid sequence
Fig. 3SDS-PAGE and protein identification of each sample. a Samples (5 μg/lane) from pellicle, GCF, parotid gland, and mixed gland, were analyzed on SDS-PAGE (15% acrylamide). b Proteins in the major bands(1–13)were identified by mass spectrometry. The bands from the gel were punched out and analyzed by LC–MS/MS. Pellicle, GCF, parotid saliva, and mixed gland saliva contained 11, 10, 9, and 9 of the 13 proteins identified, respectively
Proteins identified in pellicle, GCF, and saliva samples
| No | Accession number | Score | %Cov | Name | Peptides (95%) |
|---|---|---|---|---|---|
| 1 | P02768 | 132.13 | 85.1 | Serum albumin | 160 |
| 2 | P19013 | 124.83 | 88 | Keratin, type II cytoskeletal 4 | 148 |
| 3 | P13646 | 118.77 | 78.6 | Keratin, type I cytoskeletal 13 | 186 |
| 4 | P02538 | 112.25 | 71.8 | Keratin, type II cytoskeletal 6A | 118 |
| 5 | P02788 | 93.78 | 76.3 | Lactotransferrin | 65 |
| 6 | P01833 | 84.02 | 59.4 | Polymeric immunoglobulin receptor | 90 |
| 7 | P04745 | 79.37 | 81.2 | Alpha-amylase 1 | 129 |
| 8 | P15924 | 77.69 | 33.2 | Desmoplakin | 44 |
| 9 | P02533 | 81.99 | 83.7 | Keratin, type I cytoskeletal 14 | 75 |
| 10 | P02812 | 67.59 | 88.9 | Basic salivary proline-rich protein 2 | |
| 11 | P01876 | 64.9 | 91.2 | Ig alpha-1 chain C region | 101 |
| 12 | P13647 | 99.44 | 70.5 | Keratin, type II cytoskeletal 5 | 88 |
| 13 | P02787 | 56.01 | 58.6 | Serotransferrin | 31 |
| 14 | P04083 | 46.39 | 75.7 | Annexin A1 | 36 |
| 15 | Q9HC84 | 45.57 | 10.1 | Mucin-5B | 23 |
| 16 | O60437 | 45.31 | 28.6 | Periplakin | 25 |
| 17 | P01036 | 41.83 | 72.3 | Cystatin-S | 119 |
| 18 | P08779 | 80.32 | 79.1 | Keratin, type I cytoskeletal 16 | 67 |
| 19 | P63261 | 37.63 | 80.3 | Actin, cytoplasmic 2 | 33 |
| 20 | Q9UBC9 | 37.18 | 93.5 | Small proline-rich protein 3 | 20 |
| 21 | P01871 | 36.8 | 59.5 | Ig mu chain C region | 26 |
| 22 | P25311 | 35.97 | 67.1 | Zinc-alpha-2-glycoprotein | 26 |
| 23 | P04280 | 66.34 | 88.5 | Basic salivary proline-rich protein 1 | 62 |
| 24 | P05164 | 34.63 | 48.5 | Myeloperoxidase | 23 |
| 25 | P02810 | 34.35 | 72.3 | Salivary acidic proline-rich phosphoprotein | 77 |
| 26 | P13645 | 53.41 | 63.2 | Keratin, type I cytoskeletal 10 | 42 |
| 27 | P06733 | 34 | 69.8 | Alpha-enolase | 23 |
| 28 | P14618 | 33.39 | 52 | Pyruvate kinase isozymes M1/M2 | 19 |
| 29 | P31947 | 31.24 | 76.6 | 14-3-3 protein sigma | 19 |
| 30 | P22079 | 30.42 | 43 | Lactoperoxidase | 17 |
| 31 | Q09666 | 29.74 | 24.3 | Neuroblast differentiation-associated protein | 21 |
| 32 | P07355 | 29.14 | 54 | Annexin A2 | 17 |
| 33 | P61626 | 28.07 | 63.5 | Lysozyme C | 47 |
| 34 | Q9UBG3 | 26.93 | 54.1 | Cornulin | 25 |
| 35 | Q9UGM3 | 26.74 | 37.9 | Deleted in malignant brain tumors 1 protein | 16 |
| 36 | P01857 | 26.64 | 79.1 | Ig gamma-1 chain C region | 29 |
| 37 | P05109 | 26 | 90.3 | Protein S100-A8 | 23 |
| 38 | Q92817 | 25.4 | 21.5 | Envoplakin | 13 |
| 39 | P12273 | 24.91 | 78.1 | Prolactin-inducible protein | 30 |
| 40 | Q01546 | 41.09 | 51.7 | Keratin, type II cytoskeletal 2 | 31 |
| 41 | P01024 | 23.14 | 19.4 | Complement C3 | 18 |
| 42 | A8K2U0 | 22.13 | 22.3 | Alpha-2-macroglobulin-like protein 1 | 14 |
| 43 | Q08188 | 21.57 | 38.1 | Protein-glutamine gamma-glutamyltransferase E | 12 |
| 44 | P04406 | 21.56 | 58.5 | Glyceraldehyde-3-phosphate dehydrogenase | 15 |
| 45 | P06702 | 21.49 | 91.2 | Protein S100-A9 | 38 |
| 46 | P14923 | 19.71 | 34.8 | Junction plakoglobin | 14 |
| 47 | Q8N1N4 | 31.48 | 43.1 | Keratin, type II cytoskeletal 78 | 20 |
| 48 | P08107 | 19.12 | 19.5 | Heat shock 70 kDa protein 1A/1B | 10 |
| 49 | P09228 | 31.05 | 76.6 | Cystatin-SA OS = Homo sapiens | 73 |
| 50 | P07476 | 18.23 | 32.5 | Involucrin OS = Homo sapiens | 12 |
The top 50 proteins identified in the mixed sample of pellicles, GCF, parotid saliva, and mixed saliva are listed. During iTRAQ analysis, a mixture of the four samples was analyzed by LC–MS/MS quantitatively. All of the major proteins in Fig. 3b except for histone H2B are among the top 50 proteins in Table 1. Note that keratins may be originated from surrounding tissue or environment. N: number of identified proteins. The proteins are listed in the order of reliability evaluated by the “score” and the “%Cov”. Score: A value indicating the reliability of the identification calculated from the accuracy of the amino acid sequence of the fragments, the intensity of peptide signals, coverage of the whole protein sequence, and number of fragments detected. % Cov: The ratio of amino acid number identified from the peptides to the whole sequence of the protein. Peptides (95%): The number of peptide fragments reliably identified for the protein
Relative ratios of the major proteins in pellicle quantified by iTRAQ
Quantitative analysis of the proteins in the pellicle, GCF, saliva from parotid gland and saliva from mixed gland was performed using iTRAQ labeling. Amount of each protein in pellicle was compared with those in GCF or two saliva samples among each subject (n = 6). The ratio calculated for each protein was indicated in the table; colored tiles represent ratio ≥ 3 (blue), ≥ 1.5 (sky), ≤ 0.67 (pink) or ≤ 0.33 (magenta), respectively. When the data was not reliable enough based on consistency of peptide signals in MS/MS the tile was left uncolored. Statistical analysis was carried out by Kruscal–Wallis test. P values ≤ 0.05, *; P ≤ 0.01, **; P ≤ 0.005, ***
Fig. 4Detection of pellicle proteins by western blot. Samples (5 μg/lane) from pellicle, GCF, parotid gland, and mixed gland, were subjected to SDS-PAGE. Three pellicle proteins, cystatin S (a), α-amylase (b), and serotransferrin (c), were examined by western blot