| Literature DB >> 31937902 |
Rebecca D Chernock1,2, Barbara Rivera3,4, Nicla Borrelli5, D Ashley Hill6, Somayyeh Fahiminiya7, Tasha Shah4, Anne-Sophie Chong8, Barina Aqil9, Mitra Mehrad10, Thomas J Giordano11,12, Rachel Sheridan13, Meilan M Rutter14,15, Louis P Dehner16, William D Foulkes3,4,7,8, Yuri E Nikiforov17.
Abstract
Poorly differentiated thyroid carcinomas (PDTC) in young individuals are rare and their clinical and histopathologic features, genetic mechanisms, and outcomes remain largely unknown. Here, we report a detailed characterization of a series of six PDTC in patients ≤21 years old defined by Turin diagnostic criteria studied for mutations and gene fusions characteristic of thyroid cancer using targeted next-generation sequencing (NGS) and whole-exome sequencing (WES). All tumors had solid, insular, or trabecular growth pattern and high mitotic rate, and five out of six tumors showed tumor necrosis. Targeted NGS assay identified somatic mutations in the DICER1 gene in five of six (83%) tumors, all of which were "hotspot" mutations encoding the metal-ion binding sites of the RNase IIIb domain of DICER1. WES was performed in five cases which confirmed all hotspot mutations and detected two tumors with additional inactivating DICER1 alterations. Of these two, one was a germline pathogenic DICER1 variant and the other had loss of heterozygosity for DICER1. No other mutations or gene fusions characteristic of adult well-differentiated thyroid cancer and PDTC (BRAF, RAS, TERT, RET/PTC, and other) were detected. On follow-up, available for five patients, three patients died of disease 8-24 months after diagnosis, whereas two were alive with no disease. The results of our study demonstrate that childhood- and adolescent-onset PDTC are genetically distinct from adult-onset PDTC in that they are strongly associated with DICER1 mutations and may herald DICER1 syndrome in a minority. As such, all young persons with PDTC may benefit from genetic counseling. Furthermore, their clinically aggressive behavior contrasts sharply with the indolent nature of the great majority of thyroid tumors with DICER1 mutations reported to date.Entities:
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Year: 2020 PMID: 31937902 PMCID: PMC7329587 DOI: 10.1038/s41379-020-0458-7
Source DB: PubMed Journal: Mod Pathol ISSN: 0893-3952 Impact factor: 7.842
Clinical and pathologic features of pediatric poorly differentiated thyroid carcinoma
| Case | Patient | Sex | Prior | Differentiated | Tumor | Mitosis | Necrosis | TG/ | LVI | ETE | Margin | LN | Distant | Patient |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19 | F | + | No | 7.5 | 40 | + | +/+ | + | + | + | + | Lung/brain | DOD ( | |
| 17 | M | − | No | 9.0 | 37 | + | +/+ | + | + | + | − | Lung/finger/scalp | DOD ( | |
| 14 | F | − | Encapsulated FV PTC | 6.4 | 10 | − | NA | + | − | − | + | − | AWOD ( | |
| 17 | F | − | PTC | 3.1 | 22 | + | +/+ | + | − | − | − | − | AWOD ( | |
| 16 | M | − | Rare microfollicles | >7.5 | 9 | + | −/+ | + | + | + | + | Lung | DOD ( | |
| 14 | F | − | Encapsulated FV PTC | 5.0 | 21 | + | +/+ | + | − | − | − | − | NA |
FV PTC follicular variant papillary thyroid carcinoma; HPF high power field; TG thyroglobulin; TTF-1 thyroid transcription factor-1; NA not available; LVI lymphovascular invasion; ETE extrathyroidal extension; LN lymph node; mets metastases; mo months; DOD dead of disease; AWOD alive without disease
Fig 1Representative routine hematoxylin and eosin stained images of pediatric poorly differentiated thyroid carcinomas showing solid (A), insular (C) and trabecular (E) growth patterns. Mitotic activity (A) and necrosis (C) are present. Extrathyroidal extension with strap muscle invasion (B), vascular invasion (D) and positive margins (F) in Case 1. Only the 3 lethal cases showed extrathyroidal extension and positive margins, whereas lymphovascular invasion was present in all cases.
Fig 2Both Case 3 and Case 6 showed poorly differentiated thyroid carcinomas arising in encapsulated follicular variant of papillary thyroid carcinoma. In Case 3 (A), the poorly differentiated component was focal (top right), whereas in Case 6 (B), it was extensive. Transition zones between papillary thyroid carcinoma and the poorly differentiated component are shown for Case 3 (C) and Case 6 (D). Case 3 was completely encapsulated but showed lymphovascular invasion (E). Case 6 showed capsular invasion (F) in addition to lymphovascular invasion.
DICER1 pathogenic variants in pediatric poorly differentiated thyroid carcinoma
| Case | Somatic mutations | Germline mutation | Other |
|---|---|---|---|
| p.1713Y(108/242) | - | - | |
| p.E1813K (71/219) | c.735-8T>G (41/69) | - | |
| #1 p.D1709N (78/210) | - | - | |
| p.E1813Q (156/163) | - | LOH | |
| - | - | - | |
| p.E1705K | NA | - |
VAF Variant allele frequency shown in number of reads of alternate allele over total number of reads; NA not available; LOH loss of heterozygosity
Sample 6 was not subjected to WES so there is no VAF to report
Fig 3RNase IIIb and non-RNase IIIb domain DICER1 somatic mutations. RNase IIIb domain mutations in Cases 1-4 and 6 (A-E): A) Electropherogram of a G>T substitution at c.5137 resulting in a D1713Y missense mutation (Case 1) B) Electropherogram of a G>A substitution at c.5437 leading to an E1813K missense mutation (Case 2). C) Electropherogram of a G>A substitution at c.5125 causing a D1709N missense mutation (Case 3). D) Electropherogram of a G>C substitution at c.5437 causing an E1813Q missense mutation and loss of heterozygosity (Case 4). E): Electropherogram of a G>A substitution at c.5113 causing an E1705K missense mutation (Case 6). Non-RNase IIIb domain DICER1 mutation in Case 3: F) Electropherogram of an A duplication at c.3627 resulting in a frameshift mutation causing p.P1210Tfs*25.
Fig 4A) Chromatogram (upper) showing the location of the wild-type splice acceptor site before exon 7 in DNA from a control. Chromatogram (lower) showing the variant c.735-8T>G (asterisk) and cryptic new acceptor splice site in DNA from Case 2. Black bold with underlined lettering shows the WT base. Bold red lettering shows the altered base. Blue arrow points to the wildtype splice acceptor and red arrow indicates the location of the new cryptic acceptor site. B) Schematic representation of the expected protein with an intact exon 7 acceptor splice site compared to the mutated c.735-8T>G acceptor splice site. The red lines represent the aberrant splicing which retains 7bp from intron 6 and would be predicated to lead to a premature stop codon (red asterisk). If an aberrant transcript is present triggering its degradation by nonsense-mediated mRNA decay, no abnormal transcript would be detected in cDNA and the junction between Exon 6 and Exon 7 appeared to be intact. In the figure, upper chromatogram shows a wildtype junction between exons 6 and 7 in cDNA from case 4. Lower chromatogram shows allelic imbalance in exon 25 at position, c.5437G>A, p.E1813K in cDNA. In this scenario, chromatograms depicting the presence of the hotspot mutation and a wildtype splicing in cDNA suggests 1) that an aberrant transcript has been degraded and only the allele with the c.5437G>A, p.E1813K is retained and 2) the two variants are in trans. Yellow represents the DexD/H helicase domain. Blue represents the amino acids not belonging to a specific known domain.
Somatic mutations in other genes in the MSKCC-Impact panel (468 genes)
| Gene | Case | Mutation | Oncogenic | COSMIC | VAF | SIFT | Poly | Mutation | Revel | MCAP | CADD |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ATM | 1 | c.583dupA; p.T195fs | Predicted Driver Tier 1 | NA | 24/31 | NA | NA | NA | NA | NA | NA |
| CDC73 | 1 | c.1013delA; p.Q338fs | Predicted Driver Tier 1 | NA | 57/138 | NA | NA | NA | NA | NA | NA |
| MAP2K2 | 2 | c.C383G; p.P128R | Predicted Driver Tier 1 | NA | 86/322 | 0,1.00,D | 1.0,D | 1.0,D | 0.916 | 0.693 | 26.8 |
| RBM10 | 2 | c.C2065T; p.R689C | Predicted Driver Tier 1 | COSM1315532 | 35/154 | 0,1.00,D | 1.0,D | 1.0,D | 0.466 | 0.864 | 34 |
| ARID1A | 2 | c.5624_5625insCCCTGCCC; p.P1875fs | Predicted Driver Tier 1 | NA | 73/284 | NA | NA | NA | NA | NA | NA |
| FLT3 | 2 | c.G854T; p.W285L | Predicted Driver Tier 1 | NA | 30/115 | 0.22,0.78,T | 0.737,P | 0.967,D | 0.47 | 0.0465 | 26.9 |
| EGFR | 4 | c.C2506G; p.R836G | Predicted Driver Tier 1 | NA | 32/162 | 0,1.00,D | 1.0,D | 1.0,D | 0.856 | 0.289 | 34 |
| TP53 | 4 | c.G631T; p.E211X | Predicted Driver Tier 1 | COSM11078, COSM308326 | 129/136 | NA | NA | NA | NA | NA | 35 |
VAF variant allele frequency shown in number of reads of alternate allele over total number of reads; D damaging; B benign, P probably damaging, T tolerated, NA not applicable
DNA was amplified with primers flanking from exon 2 to exon 27 (Supplemental Table 1)