| Literature DB >> 31931704 |
Yujuan Shen1, Baiyan Gong2, Xiaohua Liu2, Yanchen Wu2, Fengkun Yang2, Jie Xu1, Xiaofan Zhang1, Jianping Cao3, Aiqin Liu4.
Abstract
BACKGROUND: Intestinal pathogen infections are widespread among impoverished populations. Enterocytozoon bieneusi is the most common pathogen of intestinal microsporidian species in humans worldwide. However, no epidemiological information is available on E. bieneusi infection in humans in Myanmar. The present study comprised the first identification and genotyping of E. bieneusi in humans conducted in Myanmar.Entities:
Keywords: Enterocytozoon bieneusi; Genotype; Humans; Phylogeny; Prevalence
Mesh:
Substances:
Year: 2020 PMID: 31931704 PMCID: PMC6958778 DOI: 10.1186/s12866-019-1694-1
Source DB: PubMed Journal: BMC Microbiol ISSN: 1471-2180 Impact factor: 3.605
Fig. 1Distribution of E. bieneusi genotypes in humans by group worldwide (n = 106). Shaded parts represent the genotypes in both humans and animals. The data presented here are based on the work of Li et al. [2]
Prevalence and distribution of E. bieneusi genotypes in humans by village
| Collection site | Positive no./Examined no. (%) | Genotype/s ( |
|---|---|---|
| Village I | 4/32 (12.50) | Peru6 (1), D (1), |
| Village II | 2/52 (3.85) | Peru6 (2) |
| Village III | 4/52 (7.69) | Peru6 (2), |
| Village IV | 5/36 (13.89) | Peru6 (5) |
| Total | 15/172 (8.72) | Peru6 (10), D (1), |
a The genotypes in bold are novel genotypes obtained in the present study
Analysis of risk factors for E. bieneusi infection
| Variable | Examined no. (%) | Positive no (%) | ORa (95% CIb) | χ2/ | ||
|---|---|---|---|---|---|---|
| Demographic factor | Sex | Male | 94/54.65 | 11/11.70 | 2.45 (0.75, 8.03) | 1.56/0.21 |
| Female | 78/45.35 | 4/5.13 | ||||
| Age (years) | Children (< 13) | 97/56.39 | 5/5.15 | Ref | ||
| Teenagers (13–17) | 41/23.84 | 5/12.20 | 0.39 (0.11, 1.43) | 2.13/0.15 | ||
| Adults (≥ 18 years) | 34/19.77 | 5/14.71 | 0.32 (0.09, 1.17) | 3.26/0.07 | ||
| Clinical symptoms | Diarrhea | Yes | 42/24.42 | 3/7.14 | 0.76 (0.20, 2.82) | 0.01/0.92 |
| No | 130/75.58 | 12/9.23 | ||||
| Abdominal pain | Yes | 24/13.95 | 2/8.33 | 0.94 (0.20, 4.47) | 0/1.00 | |
| No | 148/86.05 | 13/8.78 | ||||
| Nausea | Yes | 5/2.91 | 0 | 1.10 (1.05, 1.15) | −/1.00c | |
| No | 167/97.09 | 15/8.98 | ||||
| Emesis | Yes | 8/4.65 | 1/12.5 | 1.53 (0.18, 13.35) | 0/1.00 | |
| No | 164/95.35 | 14/8.54 | ||||
| Anorexia | Yes | 6/3.49 | 1/16.67 | 2.17 (0.24, 19.91) | 0/1.00 | |
| No | 166/96.51 | 14/8.43 | ||||
| Personal hygiene habits | Drinking boiled water | Yes | 135/78.49 | 12/8.89 | 1.11 (0.30, 4.14) | 0/1.00 |
| No | 37/21.51 | 3/8.11 | ||||
| Washing hands before meals | Yes | 98/56.98 | 9/9.18 | 1.15 (0.39, 3.38) | 0.06/0.80 | |
| No | 74/43.02 | 6/8.11 | ||||
| Washing hands after using toilets | Yes | 73/42.44 | 9/12.33 | 2.18 (0.74, 6.42) | 2.07/0.15 | |
| No | 99/57.56 | 6/6.06 | ||||
| Eating unwashed vegetables and fruits | Yes | 145/84.30 | 15/10.34 | 0.90 (0.85, 0.95) | −/0.13c | |
| No | 27/15.70 | 0 | Ref | |||
| Others | Pit toilets | Public | 166/96.51 | 15/9.04 | 0.91 (0.87, 0.95) | −/1.00c |
| Individual | 6/3.49 | 0 | ||||
| Animal feeding patterns | Free-ranging | 36/20.93 | 2/5.56 | 0.56 (0.07, 4.29) | 0/0.98 | |
| Both free-ranging and captive | 115/66.86 | 11/9.57 | 1.01 (0.21, 4.90) | 0/1.00 | ||
| Captive | 21/12.21 | 2/9.52 | Ref | |||
a OR Odds ratio. b CI Confidence interval. c Fisher’s exact test
Fig. 2Percentage of E. bieneusi infection in humans by age
Analysis of risk factors for E. bieneusi infection in children
| Variable | Examined no. (%) | Positive no (%) | ORa (95% CIb) | χ2/ |
|---|---|---|---|---|
| Demographic factor | ||||
| Sex | ||||
| Male | 44/45.36 | 4/9.09 | 5.20 (0.56, 48.35) | 1.29/0.26 |
| Female | 53/54.64 | 1/1.89 | ||
| Clinical symptoms | ||||
| Diarrhea | ||||
| Yes | 26/26.80 | 2/7.69 | 1.89 (0.30, 12.00) | 0.03/0.87 |
| No | 71/73.20 | 3/4.23 | ||
| Abdominal pain | ||||
| Yes | 14/14.43 | 1/7.14 | 0.66 (0.07, 6.36) | 0/1.00 |
| No | 83/85.57 | 4/4.82 | ||
| Nausea | ||||
| Yes | 3/3.09 | 0 | 1.03 (1.00, 1.07) | −/1.00c |
| No | 94/96.91 | 5/5.32 | ||
| Emesis | ||||
| Yes | 2/2.06 | 0 | 1.02 (1.00, 1.05) | −/1.00c |
| No | 95/97.94 | 5/5.26 | ||
| Anorexia | ||||
| Yes | 2/2.06 | 0 | 1.02 (1.00, 1.05) | −/1.00c |
| No | 95/97.94 | 5/5.26 | ||
| Personal hygiene habits | ||||
| Drinking boiled water | ||||
| Yes | 71/73.20 | 2/2.82 | 4.50 (0.71, 28.63) | 1.45/0.23 |
| No | 26/26.80 | 3/11.54 | ||
| Washing hands before meals | ||||
| Yes | 42/43.30 | 4/9.52 | 0.18 (0.02, 1.64) | 1.53/0.22 |
| No | 55/56.70 | 1/1.82 | ||
| Washing hands after using toilets | ||||
| Yes | 31/31.96 | 0 | 1.08 (1.01, 1.16) | −/0.17c |
| No | 66/68.04 | 5/7.58 | ||
| Eating unwashed vegetables and fruits | ||||
| Yes | 79/81.44 | 5/6.33 | 1.24 (1.12, 1.38) | −/0.58c |
| No | 18/18.56 | 0 | ||
| Others | ||||
| Pit toilets | ||||
| Public | 95/97.94 | 5/5.26 | 1.02 (1.00, 1.05) | −/1.00c |
| Individual | 2/2.06 | 0 | ||
| Animal feeding patterns | ||||
| Free-ranging | 29/29.90 | 1/3.45 | 0.39 (0.02, 6.85) | 0/1.00 |
| Both free-ranging and captive | 56/57.73 | 3/5.36 | 0.62 (0.06, 6.56) | 0/1.00 |
| Captive | 12/12.37 | 1/8.33 | Ref | |
a OR Odds ratio. b CI Confidence interval. c Fisher’s exact test
Variation at 18 polymorphic sites within the ITS sequences of E. bieneusi isolates in Myanmar
| Genotype (no.) | GenBank accession no. | Nucleotide at position: | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12 | 30 | 31 | 35 | 38 | 58 | 81 | 93 | 100 | 113 | 117 | 131 | 138 | 169 | 176 | 195 | 200 | 221 | ||
| Knowna | |||||||||||||||||||
| Peru6 (10) | KY950540 | G | T | A | T | A | A | C | T | A | C | G | G | G | G | A | G | A | A |
| D (1) | MG491314 | G | T | G | T | G | G | C | C | G | C | T | G | G | G | A | G | A | A |
| Novel | |||||||||||||||||||
| MMR23 (1) | MN399816 | G | T | A | T | A | A | C | T | A | C | G | G | G | A | A | G | A | A |
| MMR25 (1) | MN399817 | G | T | A | T | G | A | C | T | A | C | G | G | G | A | A | A | A | A |
| MMR86 (1) | MN399818 | T | C | A | C | G | G | T | T | G | T | T | A | A | G | G | G | A | A |
| MMR87 (1) | MN399819 | G | T | G | T | G | G | C | C | G | C | T | G | G | G | A | G | G | G |
a Accession numbers of known genotypes, indicating that E. bieneusi isolates have 100% homology with the sequences from GenBank
Fig. 3Phylogenetic relationships of the genotypes of E. bieneusi. The relationships of the genotypes of E. bieneusi identified in this study and known genotypes published in GenBank were inferred using a neighbor-joining analysis of ITS sequences based on genetic distances calculated by the Kimura 2-parameter model. The numbers on the branches are percent bootstrapping values from 1000 replicates. Each sequence is identified by its accession number, host origin, and genotype designation. The group terminology for the clusters is based on the work of Li et al. [2]. The triangles and squares filled in black indicate known genotypes and novel genotypes identified in this study, respectively