Literature DB >> 31927962

Exploring Chloride Selectivity and Halogenase Regioselectivity of the SalL Enzyme through Quantum Mechanical/Molecular Mechanical Modeling.

Paulo R M Pereira1, Jéssica de O Araújo1, José Rogério A Silva1, Cláudio N Alves1, Jerônimo Lameira1,2, Anderson H Lima1.   

Abstract

The catalytic mechanism of SalL chlorinase has been investigated by combining quantum mechanical/molecular mechanical (QM/MM) techniques and umbrella sampling simulations to compute free energy profiles. Our results shed light on the interesting fact that the substitution of chloride with fluorine in SalL chlorinase leads to a loss of halogenase activity. The potential of mean force based on DFTB3/MM analysis shows that fluorination corresponds to a barrier 13.5 kcal·mol-1 higher than chlorination. Additionally, our results present a molecular description of SalL acting as a chlorinase instead of a methyl-halide transferase.

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Year:  2020        PMID: 31927962     DOI: 10.1021/acs.jcim.9b01079

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  7 in total

1.  Drug repurposing and computational modeling for discovery of inhibitors of the main protease (Mpro) of SARS-CoV-2.

Authors:  José Rogério A Silva; Hendrik G Kruger; Fábio A Molfetta
Journal:  RSC Adv       Date:  2021-07-02       Impact factor: 4.036

2.  A Nonconventional Archaeal Fluorinase Identified by In Silico Mining for Enhanced Fluorine Biocatalysis.

Authors:  Isabel Pardo; David Bednar; Patricia Calero; Daniel C Volke; Jiří Damborský; Pablo I Nikel
Journal:  ACS Catal       Date:  2022-05-19       Impact factor: 13.700

Review 3.  Synthetic biology enabling access to designer polyketides.

Authors:  Alexandra A Malico; Lindsay Nichols; Gavin J Williams
Journal:  Curr Opin Chem Biol       Date:  2020-08-04       Impact factor: 8.822

4.  QM/MM Study of the Fosfomycin Resistance Mechanism Involving FosB Enzyme.

Authors:  Anderson H Lima; José Rogério A Silva; Cláudio Nahum Alves; Jerônimo Lameira
Journal:  ACS Omega       Date:  2021-05-03

5.  Evaluating the Performance of a Non-Bonded Cu2+ Model Including Jahn-Teller Effect into the Binding of Tyrosinase Inhibitors.

Authors:  Lucas Sousa Martins; Jerônimo Lameira; Hendrik G Kruger; Cláudio Nahum Alves; José Rogério A Silva
Journal:  Int J Mol Sci       Date:  2020-07-06       Impact factor: 5.923

6.  Exploring the Catalytic Mechanism of the RNA Cap Modification by nsp16-nsp10 Complex of SARS-CoV-2 through a QM/MM Approach.

Authors:  José Rogério A Silva; Jaime Urban; Edson Araújo; Jerônimo Lameira; Vicent Moliner; Cláudio Nahum Alves
Journal:  Int J Mol Sci       Date:  2021-12-28       Impact factor: 5.923

7.  A Computational Study of the Promiscuity of the SAM-Dependent Methyltransferase AtHTMT1.

Authors:  Timm Lankau; Hao Chun Ken; Hsiang Ming Chang; Chin Hui Yu
Journal:  ACS Omega       Date:  2022-04-06
  7 in total

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