Literature DB >> 32758909

Synthetic biology enabling access to designer polyketides.

Alexandra A Malico1, Lindsay Nichols1, Gavin J Williams2.   

Abstract

The full potential of polyketide discovery has yet to be reached owing to a lack of suitable technologies and knowledge required to advance engineering of polyketide biosynthesis. Recent investigations on the discovery, enhancement, and non-natural use of these biosynthetic gene clusters via computational biology, metabolic engineering, structural biology, and enzymology-guided approaches have facilitated improved access to designer polyketides. Here, we discuss recent successes in gene cluster discovery, host strain engineering, precursor-directed biosynthesis, combinatorial biosynthesis, polyketide tailoring, and high-throughput synthetic biology, as well as challenges and outlooks for rapidly generating useful target polyketides.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Enzyme engineering; Metabolic engineering; Natural products; Polyketides; Synthetic biology

Year:  2020        PMID: 32758909      PMCID: PMC7820671          DOI: 10.1016/j.cbpa.2020.06.003

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  78 in total

1.  Engineering Saccharomyces cerevisiae for production of simvastatin.

Authors:  Carly M Bond; Yi Tang
Journal:  Metab Eng       Date:  2018-09-10       Impact factor: 9.783

Review 2.  Activation and Characterization of Cryptic Gene Cluster: Two Series of Aromatic Polyketides Biosynthesized by Divergent Pathways.

Authors:  Zhen-Yu Ji; Qiu-Yue Nie; Yue Yin; Mei Zhang; Hai-Xue Pan; Xian-Feng Hou; Gong-Li Tang
Journal:  Angew Chem Int Ed Engl       Date:  2019-10-24       Impact factor: 15.336

3.  Employing 25-Residue Docking Motifs from Modular Polyketide Synthases as Orthogonal Protein Connectors.

Authors:  Jessica L Meinke; Anna J Simon; Drew T Wagner; Barrett R Morrow; Shaochen You; Andrew D Ellington; Adrian T Keatinge-Clay
Journal:  ACS Synth Biol       Date:  2019-09-12       Impact factor: 5.110

4.  Engineering the Substrate Specificity of a Modular Polyketide Synthase for Installation of Consecutive Non-Natural Extender Units.

Authors:  Edward Kalkreuter; Jared M CroweTipton; Andrew N Lowell; David H Sherman; Gavin J Williams
Journal:  J Am Chem Soc       Date:  2019-01-24       Impact factor: 15.419

5.  An In Vitro and In Vivo Study of Broad-Range Phosphopantetheinyl Transferases for Heterologous Expression of Cyanobacterial Natural Products.

Authors:  Tianzhe Liu; Rabia Mazmouz; Brett A Neilan
Journal:  ACS Synth Biol       Date:  2018-03-27       Impact factor: 5.110

6.  Involvement of β-Alkylation Machinery and Two Sets of Ketosynthase-Chain-Length Factors in the Biosynthesis of Fogacin Polyketides in Actinoplanes missouriensis.

Authors:  Kei Sato; Yohei Katsuyama; Kousuke Yokota; Takayoshi Awakawa; Takeaki Tezuka; Yasuo Ohnishi
Journal:  Chembiochem       Date:  2019-03-18       Impact factor: 3.164

7.  New Sipanmycin Analogues Generated by Combinatorial Biosynthesis and Mutasynthesis Approaches Relying on the Substrate Flexibility of Key Enzymes in the Biosynthetic Pathway.

Authors:  Mónica G Malmierca; Ignacio Pérez-Victoria; Jesús Martín; Fernando Reyes; Carmen Méndez; José A Salas; Carlos Olano
Journal:  Appl Environ Microbiol       Date:  2020-01-21       Impact factor: 4.792

8.  Harnessing the intracellular triacylglycerols for titer improvement of polyketides in Streptomyces.

Authors:  Weishan Wang; Shanshan Li; Zilong Li; Jingyu Zhang; Keqiang Fan; Gaoyi Tan; Guomin Ai; Sin Man Lam; Guanghou Shui; Zhiheng Yang; Hongzhong Lu; Pinjiao Jin; Yihong Li; Xiangyin Chen; Xuekui Xia; Xueting Liu; H Kathleen Dannelly; Chen Yang; Yi Yang; Siliang Zhang; Gil Alterovitz; Wensheng Xiang; Lixin Zhang
Journal:  Nat Biotechnol       Date:  2019-12-09       Impact factor: 54.908

9.  Automated structure prediction of trans-acyltransferase polyketide synthase products.

Authors:  Eric J N Helfrich; Reiko Ueoka; Alon Dolev; Michael Rust; Roy A Meoded; Agneya Bhushan; Gianmaria Califano; Rodrigo Costa; Muriel Gugger; Christoph Steinbeck; Pablo Moreno; Jörn Piel
Journal:  Nat Chem Biol       Date:  2019-07-15       Impact factor: 15.040

10.  Chimeric 6-methylsalicylic acid synthase with domains of acyl carrier protein and methyltransferase from Pseudallescheria boydii shows novel biosynthetic activity.

Authors:  Ji-Long Liao; Ka-Lai Pang; Guang-Huan Sun; Tun-Wen Pai; Pang-Hung Hsu; Jyuan-Siou Lin; Kuang-Hui Sun; Chii-Cheng Hsieh; Shye-Jye Tang
Journal:  Microb Biotechnol       Date:  2019-06-14       Impact factor: 5.813

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  4 in total

Review 1.  Protein engineering for natural product biosynthesis and synthetic biology applications.

Authors:  Miles A Calzini; Alexandra A Malico; Melissa M Mitchler; Gavin J Williams
Journal:  Protein Eng Des Sel       Date:  2021-02-15       Impact factor: 1.952

2.  Solution Structure and Conformational Flexibility of a Polyketide Synthase Module.

Authors:  Maja Klaus; Emanuele Rossini; Andreas Linden; Karthik S Paithankar; Matthias Zeug; Zoya Ignatova; Henning Urlaub; Chaitan Khosla; Jürgen Köfinger; Gerhard Hummer; Martin Grininger
Journal:  JACS Au       Date:  2021-10-18

Review 3.  Recent trends in biocatalysis.

Authors:  Dong Yi; Thomas Bayer; Christoffel P S Badenhorst; Shuke Wu; Mark Doerr; Matthias Höhne; Uwe T Bornscheuer
Journal:  Chem Soc Rev       Date:  2021-06-18       Impact factor: 60.615

4.  Polyketide Starter and Extender Units Serve as Regulatory Ligands to Coordinate the Biosynthesis of Antibiotics in Actinomycetes.

Authors:  Panpan Wu; Ketao Chen; Bowen Li; Yanni Zhang; Hang Wu; Yuhong Chen; Shaohua Ren; Sabir Khan; Lixin Zhang; Buchang Zhang
Journal:  mBio       Date:  2021-09-28       Impact factor: 7.867

  4 in total

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