| Literature DB >> 31926775 |
Shin-Ichiro Yoshizawa1, Yasunao Hattori2, Kazuya Kobayashi1, Kenichi Akaji3.
Abstract
An octahydroisochromene scaffold has been introduced into a known SARS 3CL protease inhibitor as a novel hydrophobic core to interact with the S2 pocket of the protease. An alkyl or aryl substituent was also introduced at the 1-position of the octahydroisochromene scaffold and expected to introduce additional interactions with the protease. Sharpless-Katsuki asymmetric epoxidation and Sharpless asymmetric dihydroxylation were employed to construct the octahydroisochromene scaffold. The introductions of the P1 site His-al and the substituent at 1-position was achieved using successive reductive amination reactions. Our initial evaluations of the diastereo-isomeric mixtures (16a-d) revealed that the octahydroisochromene moiety functions as a core hydrophobic scaffold for the S2 pocket of the protease and the substituent at the 1-position may form additional interactions with the protease. The inhibitory activities of the diastereoisomerically-pure inhibitors (3a-d) strongly suggest that a specific stereo-isomer of the octahydroisochromene scaffold, (1S, 3S) 3b, directs the P1 site imidazole, the warhead aldehyde, and substituent at the 1-position of the fused ring to their appropriate pockets in the protease.Entities:
Keywords: Fused ring scaffold; Inhibitor; Octahydroisochromene; SARS 3CL protease
Mesh:
Substances:
Year: 2019 PMID: 31926775 PMCID: PMC7127348 DOI: 10.1016/j.bmc.2019.115273
Source DB: PubMed Journal: Bioorg Med Chem ISSN: 0968-0896 Impact factor: 3.641
Fig. 1The design of decahydroisoquinoline inhibitor 2.
Fig. 2The design of octahydroisochromene inhibitor 3 with four different substituents at the 1-position.
Scheme 1Retrosynthetic analysis of octahydroisochromene inhibitor 3.
Scheme 2Synthetic route used to prepare compound 13.
Scheme 3Synthetic route used to prepare inhibitors 16a–d.
IC50 values obtained for compounds 16a–d.
Effect of the chiral ligand used in the Sharpless asymmetric dihydroxylation of 12.
| Entry | Ligand | Ratio of the mixture | Yield of |
|---|---|---|---|
| 1 | (DHQ)2AQN | 1.5 : 1 | 96 |
| 2 | (DHQ)2PHAL | 6 : 1 | 85 |
| 3 | (DHQ)2Pyr | 7 : 1 | 84 |
| 4 | – | 1 : 1 | 82 |
| 5 | (DHQD)2Pyr | 1 : 15 | 85 |
The ratio of 13a and 13b was determined by 13C NMR analysis.
Scheme 4(i) Synthetic route used to prepare inhibitors (1-S, 3-R) 3a. (ii) Synthetic route used to prepare inhibitors (1-R, 3-R) 3c and (1-R, 3-S) 3d.
IC50 values obtained for inhibitors 3a–d.
Fig. 3Docking model for 3b and 3c with R188I SARS 3CLpro. (a) and (b) The interaction mode for 3b with a GBVI/WSA dG score of –8.3982 kcal/mol. (c) The interaction mode for 3c with a GBVI/WSA dG score of –7.9265 kcal/mol. Each docking model with R188I SARS 3CLpro was constructed using the X-ray crystal structure obtained for the SARS 3CLpro and decahydroisoquinoline inhibitor (PDB 4TWW) complex as a template. The possible binding mode was obtained using a docking simulation of each inhibitor and SARS 3CLpro using an automated template-guided docking protocol with the Amber10:EHT force field in the MOE 2019.0101 software package (Chemical Computing Group Inc., Montreal, Quebec, Canada).