Literature DB >> 31923488

The gene arrangement and phylogeny using mitochondrial genomes in spiders (Arachnida: Araneae).

Kaomud Tyagi1, Vikas Kumar2, Nikita Poddar1, Priya Prasad1, Inderjeet Tyagi1, Shantanu Kundu1, Kailash Chandra1.   

Abstract

The complete mitochondrial genome (mitogenome) of Cheiracanthium triviale was sequenced for the first time. The 14,595 bp C. triviale mitogenome contained 37 genes (13 protein coding genes, 2 ribosomal RNAs, 22 transfer RNAs) and one control region. The mitogenome of Dysdera silvatica which was available at NCBI GenBank was annotated. The mitogenome of C. triviale was compared with 43 previously sequenced spider species to observe the gene arrangements, control region and phylogeny. TreeREx analysis identified 19 mitochondrial gene rearrangements (11 transposition, 6 inversion, 2 inverse transposition) in spiders as compared with the putative ancestral gene order and lead to form new gene boundaries: trnQ-trnA, trnA-trnM for Loxosceles similis; nad3-trnS1, trnE-trnL2, trnL2-trnA, trnN-trnF for Agelena silvatica; trnN-trnE, trnE-trnA, trnR-trnF, nad4L-trnW, trnW-trnP for Carrhotus xanthogramma; trnQ-trnW, trnW-trnG, trnG-trnM for Tetragnatha nitens. Our study revealed that the gene rearrangement in spiders with putative ancestor is accelerated in Araneomorphae as compared to Mygalomorphae. Phylogenetic analysis of spiders using mitochondrial sequence data supports the monophyly of two infraorders, and sister relationship of Cheiracanthiidae with Selenopidae and Salticidae. The systematic position of the Cheiracanthium species always a controversial issue as this taxa was placed in different families by different authors.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Gene arrangement; Mitogenome; Phylogeny

Year:  2020        PMID: 31923488     DOI: 10.1016/j.ijbiomac.2020.01.014

Source DB:  PubMed          Journal:  Int J Biol Macromol        ISSN: 0141-8130            Impact factor:   6.953


  6 in total

1.  Characterization and phylogenetic analysis of the complete mitochondrial genome sequence of Diospyros oleifera, the first representative from the family Ebenaceae.

Authors:  Yang Xu; Yi Dong; Wenqiang Cheng; Kaiyun Wu; Haidong Gao; Lei Liu; Lei Xu; Bangchu Gong
Journal:  Heliyon       Date:  2022-07-06

2.  Gene rearrangement in the mitogenome of whiteflies (Hemiptera: Aleyrodinae) along with their phylogeny and characterization of complete mitogenome of Aleurodicus rugioperculatus.

Authors:  Vikas Kumar; Avas Pakrashi; C M Kalleshwaraswamy; Dhriti Banerjee; Kaomud Tyagi
Journal:  Mol Biol Rep       Date:  2022-03-21       Impact factor: 2.742

3.  Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea).

Authors:  Hoi-Sen Yong; Sze-Looi Song; Kah-Ooi Chua; I Wayan Suana; Praphathip Eamsobhana; Ji Tan; Phaik-Eem Lim; Kok-Gan Chan
Journal:  Sci Rep       Date:  2021-05-21       Impact factor: 4.379

4.  Characterization of four mitochondrial genomes of family Neritidae (Gastropoda: Neritimorpha) and insight into its phylogenetic relationships.

Authors:  Jian-Tong Feng; Li-Ping Xia; Cheng-Rui Yan; Jing Miao; Ying-Ying Ye; Ji-Ji Li; Bao-Ying Guo; Zhen-Ming Lü
Journal:  Sci Rep       Date:  2021-06-03       Impact factor: 4.379

5.  Mitochondrial phylogenomics provides insights into the phylogeny and evolution of spiders (Arthropoda: Araneae).

Authors:  Min Li; Wen-Ting Chen; Qi-Lin Zhang; Min Liu; Cheng-Wei Xing; Ya Cao; Fang-Zhen Luo; Ming-Long Yuan
Journal:  Zool Res       Date:  2022-07-18

6.  Comparative mitogenomic analyses provide evolutionary insights into the retrolateral tibial apophysis clade (Araneae: Entelegynae).

Authors:  Min Li; Min Liu; Shi-Yun Hu; Fang-Zhen Luo; Ming-Long Yuan
Journal:  Front Genet       Date:  2022-09-14       Impact factor: 4.772

  6 in total

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