Literature DB >> 28853881

Ultrasensitivity of Water Exchange Kinetics to the Size of Metal Ion.

Yuno Lee1, D Thirumalai2, Changbong Hyeon1.   

Abstract

Metal ions play a vital role in many biological processes. An important factor in these processes is the dynamics of exchange between ion bound-water molecules and the bulk. Although structural and dynamical properties of labile waters bound to metal ions, such as Na+ and Ca2+, can be elucidated using molecular dynamics simulations, direct evaluation of rates of exchange of waters rigidly bound to high charge density Mg2+, has been elusive. Here, we report a universal relationship, allowing us to determine the water exchange time on metal ions as a function of valence and hydration radius. The proposed relationship, which covers times spanning 14 orders of magnitude, highlights the ultrasensitivity of water lifetime to the ion size, as exemplified by divalent ions, Ca2+ (∼100 ps) and Mg2+ (∼1.5 μs). We show that even when structures, characterized by radial distributions are similar, a small difference in hydration radius leads to a qualitatively different (associative or dissociative) mechanism of water exchange. Our work provides a theoretical basis for determination of hydration radius, which is critical for accurately modeling the water dynamics around multivalent ions, and hence in describing all electrostatically driven events such as ribozyme folding and catalysis.

Entities:  

Year:  2017        PMID: 28853881     DOI: 10.1021/jacs.7b04198

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  6 in total

1.  Short solvent model for ion correlations and hydrophobic association.

Authors:  Ang Gao; Richard C Remsing; John D Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-07       Impact factor: 11.205

2.  Theory and simulations for RNA folding in mixtures of monovalent and divalent cations.

Authors:  Hung T Nguyen; Naoto Hori; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-30       Impact factor: 11.205

3.  Predicting RNA-Metal Ion Binding with Ion Dehydration Effects.

Authors:  Li-Zhen Sun; Shi-Jie Chen
Journal:  Biophys J       Date:  2018-12-13       Impact factor: 4.033

4.  Second Harmonic Scattering Reveals Ion-Specific Effects at the SiO2 and TiO2 Nanoparticle/Aqueous Interface.

Authors:  Marie Bischoff; Denys Biriukov; Milan Předota; Arianna Marchioro
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2021-11-09       Impact factor: 4.177

5.  Role of water-bridged interactions in metal ion coupled protein allostery.

Authors:  Xingyue Guan; Cheng Tan; Wenfei Li; Wei Wang; D Thirumalai
Journal:  PLoS Comput Biol       Date:  2022-06-02       Impact factor: 4.779

6.  Artificial Intelligence Resolves Kinetic Pathways of Magnesium Binding to RNA.

Authors:  Jan Neumann; Nadine Schwierz
Journal:  J Chem Theory Comput       Date:  2022-01-27       Impact factor: 6.006

  6 in total

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