Literature DB >> 31911467

Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds.

Andrea Del Cortona1,2,3,4, Christopher J Jackson5, François Bucchini2,3, Michiel Van Bel2,3, Sofie D'hondt6, Pavel Škaloud7, Charles F Delwiche8, Andrew H Knoll9, John A Raven10,11,12, Heroen Verbruggen5, Klaas Vandepoele13,3,4, Olivier De Clerck1, Frederik Leliaert1,14.   

Abstract

The Neoproterozoic Era records the transition from a largely bacterial to a predominantly eukaryotic phototrophic world, creating the foundation for the complex benthic ecosystems that have sustained Metazoa from the Ediacaran Period onward. This study focuses on the evolutionary origins of green seaweeds, which play an important ecological role in the benthos of modern sunlit oceans and likely played a crucial part in the evolution of early animals by structuring benthic habitats and providing novel niches. By applying a phylogenomic approach, we resolve deep relationships of the core Chlorophyta (Ulvophyceae or green seaweeds, and freshwater or terrestrial Chlorophyceae and Trebouxiophyceae) and unveil a rapid radiation of Chlorophyceae and the principal lineages of the Ulvophyceae late in the Neoproterozoic Era. Our time-calibrated tree points to an origin and early diversification of green seaweeds in the late Tonian and Cryogenian periods, an interval marked by two global glaciations with strong consequent changes in the amount of available marine benthic habitat. We hypothesize that unicellular and simple multicellular ancestors of green seaweeds survived these extreme climate events in isolated refugia, and diversified in benthic environments that became increasingly available as ice retreated. An increased supply of nutrients and biotic interactions, such as grazing pressure, likely triggered the independent evolution of macroscopic growth via different strategies, including true multicellularity, and multiple types of giant-celled forms.

Keywords:  Chlorophyta; Ulvophyceae; green algae; phylogenomics; phylogeny

Mesh:

Year:  2020        PMID: 31911467      PMCID: PMC7007542          DOI: 10.1073/pnas.1910060117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  57 in total

1.  An approximately unbiased test of phylogenetic tree selection.

Authors:  Hidetoshi Shimodaira
Journal:  Syst Biol       Date:  2002-06       Impact factor: 15.683

Review 2.  Eukaryotic organisms in Proterozoic oceans.

Authors:  A H Knoll; E J Javaux; D Hewitt; P Cohen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-06-29       Impact factor: 6.237

3.  Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.

Authors:  Weizhong Li; Adam Godzik
Journal:  Bioinformatics       Date:  2006-05-26       Impact factor: 6.937

4.  Phosphatized multicellular algae in the Neoproterozoic Doushantuo Formation, China, and the early evolution of florideophyte red algae.

Authors:  Shuhai Xiao; Andrew H Knoll; Xunlai Yuan; Curt M Pueschel
Journal:  Am J Bot       Date:  2004-02       Impact factor: 3.844

5.  Digging deeper: why we need more Proterozoic algal fossils and how to get them.

Authors:  Linda E Graham
Journal:  J Phycol       Date:  2018-10-22       Impact factor: 2.923

6.  Physical and gene mapping of chloroplast DNA from Atriplex triangularis and Cucumis sativa.

Authors:  J D Palmer
Journal:  Nucleic Acids Res       Date:  1982-03-11       Impact factor: 16.971

7.  The rise of algae in Cryogenian oceans and the emergence of animals.

Authors:  Jochen J Brocks; Amber J M Jarrett; Eva Sirantoine; Christian Hallmann; Yosuke Hoshino; Tharika Liyanage
Journal:  Nature       Date:  2017-08-16       Impact factor: 49.962

8.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

9.  Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria).

Authors:  Ylenia Chiari; Vincent Cahais; Nicolas Galtier; Frédéric Delsuc
Journal:  BMC Biol       Date:  2012-07-27       Impact factor: 7.431

10.  Uncertainty in the Timing of Origin of Animals and the Limits of Precision in Molecular Timescales.

Authors:  Mario dos Reis; Yuttapong Thawornwattana; Konstantinos Angelis; Maximilian J Telford; Philip C J Donoghue; Ziheng Yang
Journal:  Curr Biol       Date:  2015-10-22       Impact factor: 10.834

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  15 in total

Review 1.  The origin of phagocytosis in Earth history.

Authors:  Daniel B Mills
Journal:  Interface Focus       Date:  2020-06-12       Impact factor: 3.906

2.  Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds.

Authors:  Andrea Del Cortona; Christopher J Jackson; François Bucchini; Michiel Van Bel; Sofie D'hondt; Pavel Škaloud; Charles F Delwiche; Andrew H Knoll; John A Raven; Heroen Verbruggen; Klaas Vandepoele; Olivier De Clerck; Frederik Leliaert
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-07       Impact factor: 11.205

3.  Standard Candles for Dating Microbial Lineages.

Authors:  Gregory P Fournier; Chris W Parsons; Elise M Cutts; Erik Tamre
Journal:  Methods Mol Biol       Date:  2022

4.  Comparative genomics of Chlamydomonas.

Authors:  Rory J Craig; Ahmed R Hasan; Rob W Ness; Peter D Keightley
Journal:  Plant Cell       Date:  2021-05-31       Impact factor: 12.085

5.  Preservation of early Tonian macroalgal fossils from the Dolores Creek Formation, Yukon.

Authors:  Katie M Maloney; James D Schiffbauer; Galen P Halverson; Shuhai Xiao; Marc Laflamme
Journal:  Sci Rep       Date:  2022-04-13       Impact factor: 4.379

6.  Widespread polycistronic gene expression in green algae.

Authors:  Sean D Gallaher; Rory J Craig; Iniyan Ganesan; Samuel O Purvine; Sean R McCorkle; Jane Grimwood; Daniela Strenkert; Lital Davidi; Melissa S Roth; Tim L Jeffers; Mary S Lipton; Krishna K Niyogi; Jeremy Schmutz; Steven M Theg; Crysten E Blaby-Haas; Sabeeha S Merchant
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-16       Impact factor: 11.205

7.  The APAF1_C/WD40 repeat domain-encoding gene from the sea lettuce Ulva mutabilis sheds light on the evolution of NB-ARC domain-containing proteins in green plants.

Authors:  Michiel Kwantes; Thomas Wichard
Journal:  Planta       Date:  2022-03-02       Impact factor: 4.116

8.  Large Phylogenomic Data sets Reveal Deep Relationships and Trait Evolution in Chlorophyte Green Algae.

Authors:  Xi Li; Zheng Hou; Chenjie Xu; Xuan Shi; Lingxiao Yang; Louise A Lewis; Bojian Zhong
Journal:  Genome Biol Evol       Date:  2021-07-06       Impact factor: 3.416

9.  Metatranscriptomic Identification of Diverse and Divergent RNA Viruses in Green and Chlorarachniophyte Algae Cultures.

Authors:  Justine Charon; Vanessa Rossetto Marcelino; Richard Wetherbee; Heroen Verbruggen; Edward C Holmes
Journal:  Viruses       Date:  2020-10-19       Impact factor: 5.048

10.  An Ancient Clade of Penelope-Like Retroelements with Permuted Domains Is Present in the Green Lineage and Protists, and Dominates Many Invertebrate Genomes.

Authors:  Rory J Craig; Irina A Yushenova; Fernando Rodriguez; Irina R Arkhipova
Journal:  Mol Biol Evol       Date:  2021-10-27       Impact factor: 16.240

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