Literature DB >> 31907282

The bacterial deubiquitinase Ceg23 regulates the association of Lys-63-linked polyubiquitin molecules on the Legionella phagosome.

Kelong Ma1, Xiangkai Zhen2,3, Biao Zhou2,3, Ninghai Gan4, Yang Cao5, Chengpeng Fan6, Songying Ouyang7,3, Zhao-Qing Luo8, Jiazhang Qiu9.   

Abstract

Legionella pneumophila is the causative agent of the lung malady Legionnaires' disease, it modulates host function to create a niche termed the Legionella-containing vacuole (LCV) that permits intracellular L. pneumophila replication. One important aspect of such modulation is the co-option of the host ubiquitin network with a panel of effector proteins. Here, using recombinantly expressed and purified proteins, analytic ultracentrifugation, structural analysis, and computational modeling, along with deubiquitinase (DUB), and bacterial infection assays, we found that the bacterial defective in organelle trafficking/intracellular multiplication effector Ceg23 is a member of the ovarian tumor (OTU) DUB family. We found that Ceg23 displays high specificity toward Lys-63-linked polyubiquitin chains and is localized on the LCV, where it removes ubiquitin moieties from proteins ubiquitinated by the Lys-63-chain type. Analysis of the crystal structure of a Ceg23 variant lacking two putative transmembrane domains at 2.80 Å resolution revealed that despite very limited homology to established members of the OTU family at the primary sequence level, Ceg23 harbors a catalytic motif resembling those associated with typical OTU-type DUBs. ceg23 deletion increased the association of Lys-63-linked polyubiquitin with the bacterial phagosome, indicating that Ceg23 regulates Lys-63-linked ubiquitin signaling on the LCV. In summary, our findings indicate that Ceg23 contributes to the regulation of the association of Lys-63 type polyubiquitin with the Legionella phagosome. Future identification of host substrates targeted by Ceg23 could clarify the roles of these polyubiquitin chains in the intracellular life cycle of L. pneumophila and Ceg23's role in bacterial virulence.
© 2020 Ma et al.

Entities:  

Keywords:  Legionella pneumophila; bacteria; bacterial pathogenesis; deubiquitylation (deubiquitination); effector protein; ovarian-tumor family deubiquitinases; polyubiquitin chain; structural biology; type IV secretion system

Mesh:

Substances:

Year:  2020        PMID: 31907282      PMCID: PMC7008378          DOI: 10.1074/jbc.RA119.011758

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  62 in total

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Authors:  J D Cirillo; S L Cirillo; L Yan; L E Bermudez; S Falkow; L S Tompkins
Journal:  Infect Immun       Date:  1999-09       Impact factor: 3.441

2.  Inference of macromolecular assemblies from crystalline state.

Authors:  Evgeny Krissinel; Kim Henrick
Journal:  J Mol Biol       Date:  2007-05-13       Impact factor: 5.469

3.  A bacterial effector deubiquitinase specifically hydrolyses linear ubiquitin chains to inhibit host inflammatory signalling.

Authors:  Muyang Wan; Xiaofei Wang; Chunfeng Huang; Dandan Xu; Zhao Wang; Yan Zhou; Yongqun Zhu
Journal:  Nat Microbiol       Date:  2019-05-20       Impact factor: 17.745

4.  Structure of the Shigella T3SS effector IpaH defines a new class of E3 ubiquitin ligases.

Authors:  Alexander U Singer; John R Rohde; Robert Lam; Tatiana Skarina; Olga Kagan; Rosa Dileo; Nickolay Y Chirgadze; Marianne E Cuff; Andrzej Joachimiak; Mike Tyers; Philippe J Sansonetti; Claude Parsot; Alexei Savchenko
Journal:  Nat Struct Mol Biol       Date:  2008-11-09       Impact factor: 15.369

5.  Structural basis of substrate recognition by a bacterial deubiquitinase important for dynamics of phagosome ubiquitination.

Authors:  Michael J Sheedlo; Jiazhang Qiu; Yunhao Tan; Lake N Paul; Zhao-Qing Luo; Chittaranjan Das
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

6.  The chlamydial OTU domain-containing protein ChlaOTU is an early type III secretion effector targeting ubiquitin and NDP52.

Authors:  Ana Rita Furtado; Miriam Essid; Stéphanie Perrinet; María Eugenia Balañá; Nicholas Yoder; Pierre Dehoux; Agathe Subtil
Journal:  Cell Microbiol       Date:  2013-08-07       Impact factor: 3.715

7.  Legionnaires' disease: description of an epidemic of pneumonia.

Authors:  D W Fraser; T R Tsai; W Orenstein; W E Parkin; H J Beecham; R G Sharrar; J Harris; G F Mallison; S M Martin; J E McDade; C C Shepard; P S Brachman
Journal:  N Engl J Med       Date:  1977-12-01       Impact factor: 91.245

8.  OTU deubiquitinases reveal mechanisms of linkage specificity and enable ubiquitin chain restriction analysis.

Authors:  Tycho E T Mevissen; Manuela K Hospenthal; Paul P Geurink; Paul R Elliott; Masato Akutsu; Nadia Arnaudo; Reggy Ekkebus; Yogesh Kulathu; Tobias Wauer; Farid El Oualid; Stefan M V Freund; Huib Ovaa; David Komander
Journal:  Cell       Date:  2013-07-03       Impact factor: 41.582

9.  The Salmonella Effector Protein SopA Modulates Innate Immune Responses by Targeting TRIM E3 Ligase Family Members.

Authors:  Jana Kamanova; Hui Sun; Maria Lara-Tejero; Jorge E Galán
Journal:  PLoS Pathog       Date:  2016-04-08       Impact factor: 6.823

Review 10.  Revisiting Bacterial Ubiquitin Ligase Effectors: Weapons for Host Exploitation.

Authors:  Antonio Pisano; Francesco Albano; Eleonora Vecchio; Maurizio Renna; Giuseppe Scala; Ileana Quinto; Giuseppe Fiume
Journal:  Int J Mol Sci       Date:  2018-11-13       Impact factor: 5.923

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  11 in total

1.  Structural Basis of Ubiquitin Recognition by a Bacterial Ovarian Tumor Deubiquitinase LotA.

Authors:  Norihiro Takekawa; Tomoko Kubori; Tomoya Iwai; Hiroki Nagai; Katsumi Imada
Journal:  J Bacteriol       Date:  2021-10-11       Impact factor: 3.476

2.  Identification and characterization of diverse OTU deubiquitinases in bacteria.

Authors:  Alexander F Schubert; Justine V Nguyen; Tyler G Franklin; Paul P Geurink; Cameron G Roberts; Daniel J Sanderson; Lauren N Miller; Huib Ovaa; Kay Hofmann; Jonathan N Pruneda; David Komander
Journal:  EMBO J       Date:  2020-06-22       Impact factor: 11.598

3.  An evolutionary approach to systematic discovery of novel deubiquitinases, applied to Legionella.

Authors:  Thomas Hermanns; Ilka Woiwode; Ricardo Fm Guerreiro; Robert Vogt; Michael Lammers; Kay Hofmann
Journal:  Life Sci Alliance       Date:  2020-07-27

4.  Bacterial OTU deubiquitinases regulate substrate ubiquitination upon Legionella infection.

Authors:  Donghyuk Shin; Anshu Bhattacharya; Yi-Lin Cheng; Marta Campos Alonso; Ahmad Reza Mehdipour; Gerbrand J van der Heden van Noort; Huib Ovaa; Gerhard Hummer; Ivan Dikic
Journal:  Elife       Date:  2020-11-13       Impact factor: 8.140

Review 5.  Evolution and Adaptation of Legionella pneumophila to Manipulate the Ubiquitination Machinery of Its Amoebae and Mammalian Hosts.

Authors:  Christopher T D Price; Yousef Abu Kwaik
Journal:  Biomolecules       Date:  2021-01-15

6.  Interplay between bacterial deubiquitinase and ubiquitin E3 ligase regulates ubiquitin dynamics on Legionella phagosomes.

Authors:  Shuxin Liu; Jiwei Luo; Xiangkai Zhen; Jiazhang Qiu; Songying Ouyang; Zhao-Qing Luo
Journal:  Elife       Date:  2020-11-02       Impact factor: 8.140

Review 7.  Exploitation of the Host Ubiquitin System: Means by Legionella pneumophila.

Authors:  Jingjing Luo; Lidong Wang; Lei Song; Zhao-Qing Luo
Journal:  Front Microbiol       Date:  2021-12-22       Impact factor: 5.640

8.  Molecular mechanism of toxin neutralization in the HipBST toxin-antitoxin system of Legionella pneumophila.

Authors:  Xiangkai Zhen; Yongyu Wu; Jinli Ge; Jiaqi Fu; Le Ye; Niannian Lin; Zhijie Huang; Zihe Liu; Zhao-Qing Luo; Jiazhang Qiu; Songying Ouyang
Journal:  Nat Commun       Date:  2022-07-26       Impact factor: 17.694

Review 9.  Molecular Mimicry: a Paradigm of Host-Microbe Coevolution Illustrated by Legionella.

Authors:  Sonia Mondino; Silke Schmidt; Carmen Buchrieser
Journal:  mBio       Date:  2020-10-06       Impact factor: 7.867

Review 10.  Divergence of Legionella Effectors Reversing Conventional and Unconventional Ubiquitination.

Authors:  Tomoe Kitao; Hiroki Nagai; Tomoko Kubori
Journal:  Front Cell Infect Microbiol       Date:  2020-08-21       Impact factor: 5.293

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